Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1407 ATGAAGGAAAGTGGAAGGAAACAAGGTACCATGTCGCCATGTGCGGCATGCAAGCTTCTTCGAAGGAGATGCACGCGAGATTGCGTGTTTGCTCCTTATTTTCCTGCTGATGAACCCCAGAAGTTTGGTAGTGTTCACAAGGTTTTCGGGGCTAGCAATGTAAACAAAATGTTACAGGAATTACCTGAGCACCAAAGAAGTGATGCAGTTAGTTCAATGGTATATGAAGCCAATGCAAGGGTGAGGGACCCTGTGTATGGATGTGTGGGAGCCATATCCTCTCTTCAACAACAAGTTGATGTGCTCCAAACCCAATTGGCACTAGCACAAGCAGAGGTTGTGCACATGAGAATGCGCCAATTCTCACCACCATCAGAACAACAACAACCCTCAGTGCTTCCTGAAGCCTCCAATTCATCATCAGAGAACTTGTACCACTCAAGCAGACTCTTGTCTTCACAAACCAAGTCCGTTTTTGGCATGGACATGGTCGTTGATCAGGCCAACATGGGGCAATCCTTGTGGTCATACTAG 534 0.4682 MKESGRKQGTMSPCAACKLLRRRCTRDCVFAPYFPADEPQKFGSVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLALAQAEVVHMRMRQFSPPSEQQQPSVLPEASNSSSENLYHSSRLLSSQTKSVFGMDMVVDQANMGQSLWSY* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1407 177 MobiDBLite consensus disorder prediction 120 147 - -
Gso8g1407 177 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Gso8g1407 177 Coils Coil 92 112 - -
Gso8g1407 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 174 - -
Gso8g1407 177 MobiDBLite consensus disorder prediction 121 147 - -
Gso8g1407 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 174 - -
Gso8g1407 177 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1407 Gso-Chr8 13559228 13564049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1407 1 176 AS2 family AT1G31320 67.045 1.29e-71 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso8g1407 LOB 3.4e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1407 - - gmx:100803188 319.316