Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1390 ATGAAACTTTCTCCTTTCCTTATTTTTGCATGGTTGTGTTTGCGAACAACAACACATGCAACAACAGCAAGAGACAGTTTGAGGCCAGGTGAAATGCTTAATAACTCAAGCATTTTAACATCAGCACAAAAAAAATTCTCTCTAAAATTCGCCACAATTGAAATACCCAACACCTCCCTCAACACCTACTTGGTTATAGACCGCGCAAACACCACTGGCAATGTTGATTGGATTGGCAACAGAAACGACCCTCTTGCGTACAATTCTTGTGCACTAACACTGAACCATTCTGGTGCTTTGATCATCACACGCCACAACGGGGACTCCATTGTCCTCTATTCTCCTGCTGAGGCCACCAACAGAACCATTGCCACACTTTTGGATTCAGGGAACTTTGTTTTAAAAGAAATTGATGGCAATGGTTCTACTAAGAATGTGCTGTGGCAGAGTTTTGACCACCCTGAATTTGTTTTGTTGCCAGGAATGAAGTTAGGTGTCAACAAAAAAAGTGGCATGTCTTGGCTTGTTAAGGCATCAATTTCTAGAGCCAAGCCTGCTTCAGGTTCGTTTACTCTTGAATGGGAACCAAGGGAAGGGCAACTGGTCATAAAGAGGCAAGGGCAGGTATATTGGGCAAGTGGGTTGCTGAGAAATAAGAGATTTGAGCACATTCCAGAGGAAGTTCAGCTCATGTATGAATACAACATTGTGTCCAATGAGGAAGAAGAGTCATTCAGCTACACAACCCCAAATGGTGTATCACAATGGGTGTTATTTCACAATGGTCAGCTAAAGGACACAACTAGGGGAAGTGAGATTGCTAGAGCTGACACATGTTATGGCTACAACACCGATGGTGGTTGCCAGAGATGGGAACAACCCACATGTAGGAAGAAATCAGATCAAAGAGATATGAAGAAGTCGATTCGTGTTCATTTTGCTGCAGCAGTAGCGTCACTTGTAATTGTCATTACCTCCATTGGCATTTTCTACATAATATTAAGGAGAAGAAAATCTGCACTGAAAGATAACACAACCAGAACTGAAAATAAAATGCTGAAATTAGTGGCTTTGGATAGATATGCTGTTAGTAAACATCATTGTGAAGTAAAGAAGAGGAGTGATTCAAGAGTCTTCAGCTATGCATCAATCATTGCCATGACAAACAGGTTCTCTGTAGAAAACAAGTTAGGAGAAGGGGGTTTTGGACTAGTATACAAGGGAAAATTGCCAACAGGAGAAGATGTGGCAATAAAAAGACTATCAAAAGGTTCAAGGCAAGGAGTTATAGAGTTCAAAAATGAGTTAAACCTCATATCTCAACTCCAACACATGAATGTTATTCAGATATTGGGTTGTTGCATCCATGGAGAAGAGAGGATGTTAATCTATGAGTACATGGCTAACAAGAGCTTGGACTTTTTTTTATTTGATCGAACTAGAAAAATGCTACTAGATTGGAAGAGACGTTTCAATATAATTGAAGGAATTGCTCAAGGATTGCTCTATCTCCATAAGTATTCAAGATTGAAAGTAGTTCACAGAGATTTGAAAGCTAGTAACATACTTCTTGATGAAAACATGAATCCTAAAATTTCAGATTTTGGCACGGCAAGAATTTTCAGCCCTCAAGAATCAGAAATAAATACTGAACGAATTGTTGGAACATATGGTTACATGTCGCCTGAGTATGTCACGAGGGGAATTTTCTCAATCAAATCAGATGTCTATAGTTTTGGAGTCTTAATACTTGAAATTGTTAGTGGTGGAAGAACCAACAGCTTCTACAGTGGTGAACGCCAATGCAATCTAATAGGACATGCTTGGGAACTTTGGCAACAAGGCAAAGGACTAGAACTAGTGGATCCAACTATAAGGGATTCATGCATTGAAGACCAAGCATTAAGGTGCATTCATGTTGGTCTTCTATGTGCAGAAGATAATGCAGTTGATAGGCCAACCATATCAGACATCATAAACATGTTGACAAGTGAATATGCACCTTTTCCTCTTCCTAGAAGACCAGCATTTTACAGTAGAAGAATGCCTAATGAGGAATGCAGATGTACCAAAGGTTCTGAATGTTATTCAGTGAATGGTTTGTCTATTTCCAACGTAGTAGCAAGATAA 2130 0.3962 MKLSPFLIFAWLCLRTTTHATTARDSLRPGEMLNNSSILTSAQKKFSLKFATIEIPNTSLNTYLVIDRANTTGNVDWIGNRNDPLAYNSCALTLNHSGALIITRHNGDSIVLYSPAEATNRTIATLLDSGNFVLKEIDGNGSTKNVLWQSFDHPEFVLLPGMKLGVNKKSGMSWLVKASISRAKPASGSFTLEWEPREGQLVIKRQGQVYWASGLLRNKRFEHIPEEVQLMYEYNIVSNEEEESFSYTTPNGVSQWVLFHNGQLKDTTRGSEIARADTCYGYNTDGGCQRWEQPTCRKKSDQRDMKKSIRVHFAAAVASLVIVITSIGIFYIILRRRKSALKDNTTRTENKMLKLVALDRYAVSKHHCEVKKRSDSRVFSYASIIAMTNRFSVENKLGEGGFGLVYKGKLPTGEDVAIKRLSKGSRQGVIEFKNELNLISQLQHMNVIQILGCCIHGEERMLIYEYMANKSLDFFLFDRTRKMLLDWKRRFNIIEGIAQGLLYLHKYSRLKVVHRDLKASNILLDENMNPKISDFGTARIFSPQESEINTERIVGTYGYMSPEYVTRGIFSIKSDVYSFGVLILEIVSGGRTNSFYSGERQCNLIGHAWELWQQGKGLELVDPTIRDSCIEDQALRCIHVGLLCAEDNAVDRPTISDIINMLTSEYAPFPLPRRPAFYSRRMPNEECRCTKGSECYSVNGLSISNVVAR* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1390 709 ProSitePatterns Protein kinases ATP-binding region signature. 397 419 IPR017441 GO:0005524
Gso8g1390 709 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 11 304 - -
Gso8g1390 709 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 308 685 - -
Gso8g1390 709 SUPERFAMILY Protein kinase-like (PK-like) 375 686 IPR011009 -
Gso8g1390 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 512 524 IPR008271 GO:0004672|GO:0006468
Gso8g1390 709 Gene3D - 18 151 IPR036426 -
Gso8g1390 709 PIRSF SRK 1 289 IPR024171 GO:0004674
Gso8g1390 709 PIRSF SRK 280 709 IPR024171 GO:0004674
Gso8g1390 709 Gene3D Transferase(Phosphotransferase) domain 1 467 667 - -
Gso8g1390 709 Pfam D-mannose binding lectin 77 177 IPR001480 -
Gso8g1390 709 SMART blect_4 30 154 IPR001480 -
Gso8g1390 709 ProSiteProfiles Bulb-type lectin domain profile. 24 147 IPR001480 -
Gso8g1390 709 CDD B_lectin 33 154 IPR001480 -
Gso8g1390 709 Gene3D Phosphorylase Kinase; domain 1 355 466 - -
Gso8g1390 709 ProSiteProfiles Protein kinase domain profile. 391 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1390 709 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 308 685 - -
Gso8g1390 709 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 11 304 - -
Gso8g1390 709 Pfam Protein tyrosine and serine/threonine kinase 393 661 IPR001245 GO:0004672|GO:0006468
Gso8g1390 709 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 174 IPR036426 -
Gso8g1390 709 SMART serkin_6 391 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1390 Gso-Chr8 13298140 13303307 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1390 379 677 Receptor kinase-like Gene Family AT4G11530 58.333 3.99e-121 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso8g1390 PK_Tyr_Ser-Thr 3.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1390 - - gmx:102666068 1429.85