Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1388 ATGGGGAATGACACGCTTAATTTGGTAGTGTCTGACACATTTAACAATTTAGTTGAGCTTCAAAATGAAGTGAACAATGGCAATGCTTTAAGAATTTTCAGCTACGCATCAATCATTGCAGCTACGAACAAGTTCTCAATAGACAACAAGTTAGGAGAAGGGGGCTTCGGACCAGGATTGTTACCACAGGGAGAAGAAATAGCAATCAAAAGACTTTCGGAAGATTCGACTCAAGGTGAAAAATTAGATTGGAGAAAACATTTCAACATAATTGATGGGATTGCTCAAGGACTGCTGTATCTACATTAGTATTGAAGATTAAGAGTAGTTCACAGAGATCTGAAAGCAAGTAACATTCTAATTGATGAAAACATGAATCCCAAAATTTCAGATTTTGGCATGGCTAGAATTTTCACTCAAGAGTCAGATATAAACACTAAAAGGATTGTTGGGACATATGGTTACATGTCACCGGAATATGCAATGGAGGGAATTTTCTCTTTCGAATCTGATGTCTATGCTTTTGGAGTCTTGCTGCTAGAAATTATTAGTGGCAGAAAAAACAATACTGCTGAAGGGCCACTCAATCTAGTAGGACATGCTTGGGAGCTATGGAAACAAGGCCATGCACTAGACCTCTTAGATCCAACTTTAATAGAATCTTTCATTCAAAATGAAGTATTAAGATGCATTCATGTTGGTCTTTTATGTGTAGAAGAATGTGCAGCTGATCGCCCCAATATTTCAGAAATGATACCCATGTTAAACAGTGAAATTGCAACATTTCCATTGCCTAGAAGACCAGCATTTTACCGCGGAAAAAAGCTGGTTGAGGAATATGACTCTTTTATTGATAATGAAATCCATTCAGTGAATGGTTTAACTATTTCCAACATAGGTGGAAGATAA 909 0.3707 MGNDTLNLVVSDTFNNLVELQNEVNNGNALRIFSYASIIAATNKFSIDNKLGEGGFGPGLLPQGEEIAIKRLSEDSTQGEKLDWRKHFNIIDGIAQGLLYLH*Y*RLRVVHRDLKASNILIDENMNPKISDFGMARIFTQESDINTKRIVGTYGYMSPEYAMEGIFSFESDVYAFGVLLLEIISGRKNNTAEGPLNLVGHAWELWKQGHALDLLDPTLIESFIQNEVLRCIHVGLLCVEECAADRPNISEMIPMLNSEIATFPLPRRPAFYRGKKLVEEYDSFIDNEIHSVNGLTISNIGGR* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1388 300 ProSiteProfiles Protein kinase domain profile. 1 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1388 300 ProSitePatterns Serine/Threonine protein kinases active-site signature. 107 119 IPR008271 GO:0004672|GO:0006468
Gso8g1388 300 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 75 275 - -
Gso8g1388 300 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 13 79 - -
Gso8g1388 300 Pfam Domain of unknown function (DUF3403) 255 300 IPR021820 GO:0004674
Gso8g1388 300 SUPERFAMILY Protein kinase-like (PK-like) 33 264 IPR011009 -
Gso8g1388 300 Pfam Protein kinase domain 82 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1388 300 Gene3D Transferase(Phosphotransferase) domain 1 70 265 - -
Gso8g1388 300 SMART serkin_6 45 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1388 300 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 75 275 - -
Gso8g1388 300 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 13 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1388 Gso-Chr8 13291528 13293146 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1388 33 300 Receptor kinase-like Gene Family AT4G23280 46.667 1.43e-84 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso8g1388 Pkinase 4.8e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1388 - - gmx:100802852 580.867