Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1385 ATGGCACTAAGCACATACTTCAACTTTGAAACTCTTCAAATTCCCAACTTAGAAACAAACACTTTCCATGAAGCCATGCCAGAAGAAGTAGCAGCACCAAACCTCCAACAGCTTTTTCCCTATTCAGATGAAAGCTTCTTTCTTTCAGACGCGCTTTTTGAGAACTATATTGACCCAACTGGTGGTTTTCTCTATCCTCCAGACGTAAACCCTCCTTATGATGGGGACATTTTCCCAACTCATAAAGATTACAAACTTCTCCCATGTTCAAAACGCCAAAAGTGCTGCTATGAGGAACAACAACGACAACAAGAACACGTGTACTCTTCTTCATTGCAAGAGTTTACTACACCCACACTACCATCCAGTTTCTTAGATGGCTTTGTTATTCCTTATGATAATTGCTGCTCCTTGCAAGCAGAGGAACTGCAACAGAAACTCTTCTCCGAGACACAATATGGTGATACTTGTGTTGATCTTCCATGTGAGAAGAAAGGCAATGAGAGAACCATATCTCCACAGAGTGTAGCGGCGAGAGAAAGGAGAAGAAAGATCACTAAGAAGACTCAAGAGCTTGGGAAGTTGGTCCCTGGTGGACCAAAGATGAACACAGCTGAGATGCTTCATGCAGCTGGAAAGTATGTTATGTACCTTCAGGCCCAAGTTGGGATGCTTGAACTCATGAACACACTCGAGGAAGATAAAGCTGAACCTCCTCCTGAAAATCTACACGCTCTGGTTGCTTCTCCCTTTGTTCAAGAGAAGTTGTACACGGAGGAAAGGTGCTTTGTTCCAAAAGAAGTTGTCACTACTTTGACAAATCACAAGGATGTTCAATCGAGACCTACCATTCTTAAGGATCTTAAACAGCTGATTGGGACAGACATTGAGAAGAAAGCAAAGCAAGAATGA 912 0.4254 MALSTYFNFETLQIPNLETNTFHEAMPEEVAAPNLQQLFPYSDESFFLSDALFENYIDPTGGFLYPPDVNPPYDGDIFPTHKDYKLLPCSKRQKCCYEEQQRQQEHVYSSSLQEFTTPTLPSSFLDGFVIPYDNCCSLQAEELQQKLFSETQYGDTCVDLPCEKKGNERTISPQSVAARERRRKITKKTQELGKLVPGGPKMNTAEMLHAAGKYVMYLQAQVGMLELMNTLEEDKAEPPPENLHALVASPFVQEKLYTEERCFVPKEVVTTLTNHKDVQSRPTILKDLKQLIGTDIEKKAKQE* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1385 303 Gene3D - 169 237 IPR036638 GO:0046983
Gso8g1385 303 Pfam Helix-loop-helix DNA-binding domain 179 219 IPR011598 GO:0046983
Gso8g1385 303 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 218 IPR011598 GO:0046983
Gso8g1385 303 PANTHER TRANSCRIPTION FACTOR BHLH52-RELATED 1 288 - -
Gso8g1385 303 SMART finulus 175 224 IPR011598 GO:0046983
Gso8g1385 303 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 1 288 - -
Gso8g1385 303 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 229 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1385 Gso-Chr8 13270688 13272528 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1385 124 296 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 40.449 3.90e-30 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso8g1385 HLH 0.00014 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1385 - - gmx:102665938 623.239