Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1384 ATGGCACTAAGCACGTACTCCAACTGTGACACTCTTCAAATTTCCAACTTAGAAACAAACACTTTCCATGAAGCCATGCCAGAAGAAGAAGTAGCAGCACCAAACCTCCAACACTTTTTTTCCTACTTAGATGAAAGCTTCTTCCTTTCAAACACGCTTCTTGAGAACTACATTGACCCAACTTTCGGTTTTCTCTATCCTCCAGGGATCAACCATCCTTATGATCCCTTCACTTCACTCACTAGTCGTGATGACATTTTCCCGACTCATGAAGATTACAATCTTCTCCCATGCCCAAAACGCAAAAAATGCTGCTACGAGGAAAAACAACAACATCAAGAACACGTGTACTCTTCACTGCAAGAGATTACCACACCAACCCTACTATCCAATTTAATAGATGGATTTGTTGTGCCTTATGAAAATTGCTCCTCCTTCCAAGCAGAGGAACTCCAACAACCAGTCTTCTACGAGGTTACACAATATGGAGACCCTTGTGTGGATCTTCAGTGTGAGAAGAGAGGTACCAAGAGACCAATATCTCCGCCGAGAGAAAGGAGAAGAAAGATCACTGAGAAGACTCAAGAGCTTGGGAAGTTGGTTCCTGGTGGACCCAAGATGAACACAGCTGAGATGCTTCATGCAGCTGCAAAGTATGTTAAGTTCCTTCAAGCCCAAGTTGGGATGCTTGAACTCATGAACATACTTGAGGAAGATAAAGCTGAACCTCCTCCTGAAAATATACACGCTCTAGTTGTTTCTCCCCTTGTTCAAGAGAAGTTGTACACGGAGGAAAGGTGCTTTGTTCCAAACGGAATTGTCACTACTTTGACAAATCACGAGGATGTTCACTCAAGACCTACCATCCTTGAGGATCTTAAACAGCTGATTGGGACAGACATTGAGAAGAAGCAAAGCAAGACTAAATCTTCATAA 936 0.4284 MALSTYSNCDTLQISNLETNTFHEAMPEEEVAAPNLQHFFSYLDESFFLSNTLLENYIDPTFGFLYPPGINHPYDPFTSLTSRDDIFPTHEDYNLLPCPKRKKCCYEEKQQHQEHVYSSLQEITTPTLLSNLIDGFVVPYENCSSFQAEELQQPVFYEVTQYGDPCVDLQCEKRGTKRPISPPRERRRKITEKTQELGKLVPGGPKMNTAEMLHAAAKYVKFLQAQVGMLELMNILEEDKAEPPPENIHALVVSPLVQEKLYTEERCFVPNGIVTTLTNHEDVHSRPTILEDLKQLIGTDIEKKQSKTKSS* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1384 311 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 184 234 IPR036638 GO:0046983
Gso8g1384 311 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 174 223 IPR011598 GO:0046983
Gso8g1384 311 CDD bHLH_AtbHLH_like 184 231 IPR045239 -
Gso8g1384 311 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 1 293 - -
Gso8g1384 311 Gene3D - 183 242 IPR036638 GO:0046983
Gso8g1384 311 Pfam Helix-loop-helix DNA-binding domain 184 224 IPR011598 GO:0046983
Gso8g1384 311 SMART finulus 182 229 IPR011598 GO:0046983
Gso8g1384 311 PANTHER TRANSCRIPTION FACTOR BHLH52-RELATED 1 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1384 Gso-Chr8 13266423 13268248 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1384 69 301 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 36.800 3.09e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso8g1384 HLH 1.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1384 - - gmx:102665807 641.728