Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1372 ATGGATAAATCAGAGCAGACTCAACAGCAGCAGCAGCAACAACAGCATGTGATGGGAGTTGCCGCAGGGGCTAGCCAAATGGCCTATTCTTCTCACTACCCGACTGCTTCCATGGTGGCTTCTGGCACGCCCGCTGTAACTGCTCCTTCCCCAACTCAGGCTCCAGCTGCCTTCTCTAGTTCTGCTCACCAGCTTGCATACCAGCAAGCACAGCATTTCCACCACCAACAGCAGCAACACCAACAACAGCAGCTTCAAATGTTCTGGTCAAACCAAATGCAAGAAATTGAGCAAACAATTGACTTTAAAAACCATAGCCTTCCTCTTGCTCGGATAAAAAAGATAATGAAAGCTGATGAAGATGTCCGGATGATTTCAGCAGAAGCTCCGGTCATATTTGCAAAAGCTTGTGAAATGTTCATATTAGAGTTGACGTTGCGATCTTGGATCCACACAGAAGAGAACAAGAGGAGAACTCTACAAAAGAATGATATAGCAGCTGCTATTTCGAGAAACGATGTTTTTGATTTCTTGGTTGATATTATTCCAAGAGATGAGTTGAAAGAGGAAGGACTTGGAATAACCAAGGCTACTATTCCGTTAGTGGGTTCTCCAGCTGATATGCCATATTACTATGTCCCTCCACAGCATCCTGTTGTAGGACCACCTGGGATGATCATGGGCAAGCCCATTGGCGCTGAGCAAGCAACACTATATTCTACACAGCAGCCTCGACCTCCTGTGGCGTTCATGCCATGGCCTCATACACAACCCCTGCAACAGCAGCCACCCCAACATCAACAAACAGACTCATGA 816 0.4669 MDKSEQTQQQQQQQQHVMGVAAGASQMAYSSHYPTASMVASGTPAVTAPSPTQAPAAFSSSAHQLAYQQAQHFHHQQQQHQQQQLQMFWSNQMQEIEQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRNDVFDFLVDIIPRDELKEEGLGITKATIPLVGSPADMPYYYVPPQHPVVGPPGMIMGKPIGAEQATLYSTQQPRPPVAFMPWPHTQPLQQQPPQHQQTDS* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1372 271 Gene3D Histone, subunit A 67 184 IPR009072 GO:0046982
Gso8g1372 271 SUPERFAMILY Histone-fold 63 178 IPR009072 GO:0046982
Gso8g1372 271 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 9 264 - -
Gso8g1372 271 MobiDBLite consensus disorder prediction 42 61 - -
Gso8g1372 271 MobiDBLite consensus disorder prediction 244 271 - -
Gso8g1372 271 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 9 264 - -
Gso8g1372 271 Pfam Core histone H2A/H2B/H3/H4 69 169 IPR007125 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1372 Gso-Chr8 13156316 13159733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1372 88 233 CCAAT-HAP5 Transcription Factor Family AT1G08970 71.429 4.57e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Gso8g1372 CBFD_NFYB_HMF 2.3e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1372 K08066 - gmx:100796987 422.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1372 8 13156316 13159733 Gso15g2152 15 49534695 49537786 GST