Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1371 ATGGAGCAACCACAACTCTTGCATGACCCAAATTTCCCTCTCTTCAAAACCCCTTCTTCACCCGCCGTAACCACCACCGCCACTCACAAACCCCTTTCAACCACACCCATCACCACCACCTCCAACGGTGAGCGTCGAGAAGACCACTCCGTCGAAACCGCCGCCACCGTTGCCGCCGACGCGGAGGCGTTCGGCGACCTCGGGCTGGCGGAATGGGCGGTGAAGACGTGCCGGGAGCTCGGGATGCGGAGGCCGCGCCCCGTGCAGCGGCGGTGCATCCCGCGCGTGCTGGAGGGCCGGCACGTGCTGGGCATCGACGAGACAGGGAGCGGGAAGACGGCCGCCTTCGCGCTCCCGATCCTGCACCGTCTCGCCGAGCATCCCTTCGGCGTGTTCGCCCTCGTGGTGACGCCCACGCGCGAGCTCGCCTTCCAGCTCGCCGAGCAGTTCCGCGCCCTCGGCTCCGCCGTGCACCTCCGCATCACGGTGGTTGTCGGGGGCATGGACATGCTCAGGCAGACCAAGGAGCTCGCCGCGAGGCCGCACCTCGTCATTGCCACCCCCGGGAGGATCCACGCCCTGCTCCGCAATAACCCTGATATTCCCCCCGTTTTCTCCAGAACTAAGTTCCTTGTCTTGGATGAAGCAGATCGTGTCCTGGATGTTGGTTTTCAGGAGGAATTGAGATTTATCTTTCAGTGCTTACCAGAAAATCGACAAAACCTGTTCTTTTCTGCAACAACTACAAGTAATCTGCAAAAGTTGCGTGAACGTTACCAAGATAAGATGTATGTCTATGAGGCTTATGAAGGTTTTAAAACAGTTGAAACACTTAAGCAACAGGCTATATTCATCCCTAAAAAGGTGAAGGATGTATATTTGATGCATATTTTGGCTAAAATGGAAGATATGGGAATTCGGTCTGCCATTGTATTTATCTCAACATGCAGAGATTGTCATCGTTTAAGTTTAATGCTGGAAGTGCTTGATCAAGAAGCAGCAGCTCTGTATTCATTCAAATCACAAGCTCAGAGGCTTGAAGCACTTCACCAATTTAAATCAGGAAAGGTTTCAATACTGCTAGCAACTGATGTTGCTAGCCGCGGTTTGGATATTCCTACAGTTGATCTTGTCATCAATTATGATGTTCCAAGGTTTCCACGAGATTATATTCATCGTGTAGGTCGTACAGCAAGAGCAGGTAGAGGGGGACTGGCTTTGAGTCTTGTCACCCAGAATGATGTTGATCTTATTCATGAAATAGAAGCACTTATTGAGAAGCAACTTGAAATGATTGAATACAAAGAAAATGAGGTGCTTTCTCTCATGAAAAAGGTTTTCAGTGCTAAGAACGTAGCAGAAATGAAGATGATAGATGATGGCTTTGAAGAGAAAGCTAAAGAGCGGAAAAAACAGAAGCTGAAAATGCTAGCAGATAAAGGATTGTTAAATAAAAGAAGTAAAAAGAGAAAACGAAATAAAGAATTTGCAGAGGAAGGGGAAGAACAAAAAAATGAGGTTTTCACTGTTAGGAATGTGACGGAAATGAAGAGGATGGATGAGGATGGCATTGAGGAGAAAGCAGAAGAGGGGGGAATACAAAAACTTAAAATGCGAACACAGAAAGGTTTGTCAAAGAAAAAAAAGTTAAAAGAAAGAAATAACGAATTTGCAGATGAAGGGAAAAAACAGAAAAAAGAGAAAGTAGAAGCATTAGCAGATATAGAAACTCCAAAGAAAAGGAGTAAGAAGAGACAGTAA 1761 0.4759 MEQPQLLHDPNFPLFKTPSSPAVTTTATHKPLSTTPITTTSNGERREDHSVETAATVAADAEAFGDLGLAEWAVKTCRELGMRRPRPVQRRCIPRVLEGRHVLGIDETGSGKTAAFALPILHRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSAVHLRITVVVGGMDMLRQTKELAARPHLVIATPGRIHALLRNNPDIPPVFSRTKFLVLDEADRVLDVGFQEELRFIFQCLPENRQNLFFSATTTSNLQKLRERYQDKMYVYEAYEGFKTVETLKQQAIFIPKKVKDVYLMHILAKMEDMGIRSAIVFISTCRDCHRLSLMLEVLDQEAAALYSFKSQAQRLEALHQFKSGKVSILLATDVASRGLDIPTVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDVDLIHEIEALIEKQLEMIEYKENEVLSLMKKVFSAKNVAEMKMIDDGFEEKAKERKKQKLKMLADKGLLNKRSKKRKRNKEFAEEGEEQKNEVFTVRNVTEMKRMDEDGIEEKAEEGGIQKLKMRTQKGLSKKKKLKERNNEFADEGKKQKKEKVEALADIETPKKRSKKRQ* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1371 586 MobiDBLite consensus disorder prediction 476 503 - -
Gso8g1371 586 MobiDBLite consensus disorder prediction 17 41 - -
Gso8g1371 586 PANTHER ATP-DEPENDENT RNA HELICASE DDX49-RELATED 61 494 - -
Gso8g1371 586 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 420 IPR027417 -
Gso8g1371 586 PANTHER RNA HELICASE 61 494 - -
Gso8g1371 586 SMART ultradead3 81 281 IPR014001 -
Gso8g1371 586 MobiDBLite consensus disorder prediction 1 48 - -
Gso8g1371 586 MobiDBLite consensus disorder prediction 518 586 - -
Gso8g1371 586 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 300 440 IPR001650 -
Gso8g1371 586 CDD SF2_C_DEAD 278 410 - -
Gso8g1371 586 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 93 266 IPR014001 -
Gso8g1371 586 MobiDBLite consensus disorder prediction 549 580 - -
Gso8g1371 586 SMART helicmild6 320 401 IPR001650 -
Gso8g1371 586 Gene3D - 273 513 IPR027417 -
Gso8g1371 586 CDD DEADc_DDX49 64 267 - -
Gso8g1371 586 Gene3D - 31 266 IPR027417 -
Gso8g1371 586 Coils Coil 547 567 - -
Gso8g1371 586 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 62 90 IPR014014 GO:0003724
Gso8g1371 586 Pfam DEAD/DEAH box helicase 87 255 IPR011545 GO:0003676|GO:0005524
Gso8g1371 586 Pfam Helicase conserved C-terminal domain 304 401 IPR001650 -
Gso8g1371 586 MobiDBLite consensus disorder prediction 518 536 - -
Gso8g1371 586 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 212 220 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1371 Gso-Chr8 13148654 13154373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1371 62 414 Eukaryotic Initiation Factors Gene Family AT3G13920 32.203 2.01e-52 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1371 K14778 - gmx:100798597 1086.63