Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1354 ATGGAGAGAATGTTCCCTCCCAAGAAGCCCTCTACTATGAATTCCCATGACAGACCCATGTGTGTTCAAGGAGACTCGGGTCTTGTCCTCACCACTGACCCTAAACCTCGCCTCCGTTGGACTGTTGAGCTCCATGAACGCTTTGTTGATGCTGTTACTCAGCTTGGAGGGCCTGATAAGGCCACTCCTAAAACCATCATGAGGGTTATGGGTGTGAAGGGTCTCACCCTTTACCACCTCAAGAGCCACCTCCAGAAATTTAGGCTTGGCAAGCAGCCCCACAAGGATTTCAATGATCACTCGATTAAGGATGGTATGAGAGCTTCGGCTTTAGAACTGCAGCGAAACACTGCTTCCTCTTCTGCCATGATTGGCCGCAACATGAATGATAACTCACACATGGTTGATGCGATTAGGATGCAAATAGAGGTGCAGAGAAGACTTCATGAACAACTTGAGGTTCAAAAACACCTTCAGCTAAGGATTGAGGCTCAAGGGAAATACATGCAAAGCATATTGGAGAAGGCTTATCAAACCCTTGCTGGTGAAAACATGGCATCTGCAGCAACTAACTTAAAGAGTGCTATTGTACCTCATCATCAAGGAATCCCTGACATGGGAGTAGTGATGAAGGAGTTTGGTTCCCCTCTTGGTTTTTCTTCATTCCAAGACCTTGAGAACATTTATGGAGGTAACCAAATTGACCTTCAGCAGAACATGGAGAAGCCATCCCTTGATCATGGTTTCATGCCAATCAATGAGAGCTTGTGTTTGGGGAAGAAGAGGTCCAATAACCCTTATAGTGGGAGTGGTAAGAACCCTTTGATTTGGAGTGATGATCTAAGGCTTCAAGATTTGGGAGGGCCAGCATCATCATGCCTTGGCCCTCAAGATGACCCTTTCAAAGGTGACCAGATTCAGATTGCACCACCAGGATCATTGGATAGAGGAGCTAGCACTGACATTGATCCCATGTCAGAGATCTATGACTCAAAACCTGTGCTTCAGAGTGAAGAGAAAAAGTTTGATGCATCATCTATGAAGCTTGAAAGGCCTTCACCAAGAAGAGCACCTCTTCAGCCTGAAAGGATGAGCCCTATGATCAGCACTGGTACCATGGCACAAGGTAGAGGCTCACCATTTGGGTGA 1149 0.4639 MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKDFNDHSIKDGMRASALELQRNTASSSAMIGRNMNDNSHMVDAIRMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENMASAATNLKSAIVPHHQGIPDMGVVMKEFGSPLGFSSFQDLENIYGGNQIDLQQNMEKPSLDHGFMPINESLCLGKKRSNNPYSGSGKNPLIWSDDLRLQDLGGPASSCLGPQDDPFKGDQIQIAPPGSLDRGASTDIDPMSEIYDSKPVLQSEEKKFDASSMKLERPSPRRAPLQPERMSPMISTGTMAQGRGSPFG* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1354 382 MobiDBLite consensus disorder prediction 333 350 - -
Gso8g1354 382 MobiDBLite consensus disorder prediction 288 382 - -
Gso8g1354 382 Pfam MYB-CC type transfactor, LHEQLE motif 134 179 IPR025756 -
Gso8g1354 382 MobiDBLite consensus disorder prediction 1 20 - -
Gso8g1354 382 Gene3D - 34 92 - -
Gso8g1354 382 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Gso8g1354 382 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Gso8g1354 382 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 334 IPR044848 GO:0003700
Gso8g1354 382 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Gso8g1354 382 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 4 334 - -
Gso8g1354 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1354 Gso-Chr8 12941283 12943984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1354 4 382 G2-like Transcription Factor Family AT1G79430 56.298 4.85e-121 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso8g1354 Myb_DNA-binding 2.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1354 - - gmx:100793303 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1354 8 12941283 12943984 Gso8g1354 8 12941283 12943984 ECH
Gso8g1354 8 12941283 12943984 Gso15g2171 15 49881930 49884666 GST