Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1352 ATGGGCCACCGTTGCTGCAGCAAGCAGAAGATCAAAAGAGGGTTATGGTCTCCTGAAGAAGATGAGAAACTTCTTAGATATATCAACACACATGGACATAAAAGTTGGAGTTCAGTGCCAAAATTTGCAGGCTTGCAAAGATGTGGGAAGAGTTGCAGGTTGAGATGGATTAATTATCTGCGGCCAGATCTGAAGAGGGGTTCCTTCACTGCTGAAGAAGAGCAGATCATAATTGACATCCATAGAATTCTTGGAAACAGATGGGCACAAATAGCCAAGCACCTACCAGGAAGAACAGACAATGAGGTCAAGAATTTCTGGAACTCATGCATAAAAAAGAAGCTCATTTCACAAGGCTTAGATCCACAAACCCACACTCTCCTGTCTTCTCATAGGAGAAGCTCAGCATGTACCATCTCCAATAATATCCATCAAAATTCCAATTCCATTTTCATTATGAGTTCACACATACCAAATGCACCCTTTGAAACTACTTGTCAAACCTTTTCTACATTACCTAAACCTCCACCAAACATTGTTCAAACCCCCTCTAGCATTGTTTCCTCAGAATTTCAAACATTATCAACTATTCTTTCAGATGATGGAGAACCCCTCCAACATTTGCCTTATGAACTATTAATGGAAAACGCCACCAACATTTGTTCACCTACATACATGAACCCCTCAGCAGTTGAATTGTGTAACGATGACAACAATGTGAATTGGGTTTCAAGACTTAATGTTCATGATTTCAGTGCTCAAACACTGGAAGAAGGAGCACAAGTACTGCAGGTGCAGCAAGAGAAGGGCAAAACTTTTGATGATAAGGGAAGTGATGTGAGAGAAGCTAACAAGGGAAATCTTGAAACCAGTGTTTCTTTTGAGAGTTCTAACTTTGATCTTGGGTTTTTGGAGAGTGTACTTACCTCTGAATTCATCTCTCATGATCTCAATTGTATGGATGAACTTGCATGGAACTTTTAG 984 0.4024 MGHRCCSKQKIKRGLWSPEEDEKLLRYINTHGHKSWSSVPKFAGLQRCGKSCRLRWINYLRPDLKRGSFTAEEEQIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGLDPQTHTLLSSHRRSSACTISNNIHQNSNSIFIMSSHIPNAPFETTCQTFSTLPKPPPNIVQTPSSIVSSEFQTLSTILSDDGEPLQHLPYELLMENATNICSPTYMNPSAVELCNDDNNVNWVSRLNVHDFSAQTLEEGAQVLQVQQEKGKTFDDKGSDVREANKGNLETSVSFESSNFDLGFLESVLTSEFISHDLNCMDELAWNF* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1352 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Gso8g1352 327 Gene3D - 67 138 - -
Gso8g1352 327 CDD SANT 68 108 IPR001005 -
Gso8g1352 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Gso8g1352 327 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Gso8g1352 327 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Gso8g1352 327 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Gso8g1352 327 SMART sant 12 62 IPR001005 -
Gso8g1352 327 SMART sant 65 113 IPR001005 -
Gso8g1352 327 CDD SANT 16 60 IPR001005 -
Gso8g1352 327 Gene3D - 13 65 - -
Gso8g1352 327 PANTHER MYB DOMAIN PROTEIN 55 1 315 - -
Gso8g1352 327 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Gso8g1352 327 PANTHER BNAC05G40480D PROTEIN 1 315 - -
Gso8g1352 327 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1352 Gso-Chr8 12890890 12892859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1352 1 133 MYB Transcription Factor Family AT3G12720 87.218 5.91e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso8g1352 Myb_DNA-binding 2.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1352 K09422 - gmx:100791209 670.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1352 8 12890890 12892859 Gso8g1352 8 12890890 12892859 ECH
Gso8g1352 8 12890890 12892859 Gso15g2173 15 49961565 49963339 GST