Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1351 ATGGCTCCAATGAGTCTCCCACCTGGGTTTAGGTTCCACCCCACTGATGAAGAGCTTGTTGCTTACTACTTGGAGAGAAAAATAACAGGTCGCTCCATAGAGCTTGAAATCATTGCTGAAGTTGATTTATACAAGTGTGAACCATGGGATTTGCCAGATAAATCATTTCTCCCAAGCAAGGACATGGAGTGGTACTTTTACAGTCCTAGGGACAGGAAGTACCCAAATGGGTCAAGAACTAACCGTGCAACACAAGCTGGATACTGGAAAGCTACAGGGAAAGATAGGCCAGTGCACTCTCAAAAGAAGCAAGTTGGCATGAAGAAGACATTGGTGTACTATAGAGGTAGAGCACCACATGGGATTAGAACCAACTGGGTTATGCATGAATACCGTTTAATTGAATCAGTTCCTGGTACTGCTCTCTCATCTTTGAAGGATTCCTATTCGCTGTGTCGCATTTTCAAGAAGACGATTCAAATTCCAGCCAAACCTAATAATAACGAAGAAGAACAACCTGAGATTGCAAATAAGAAGGAATCAATGTGGATCTCAGAAGAACAAATGTTAGGGGAAGACTCAAGTGGCACTGAGATTTCTAGAGAAATGGAAAATGTGGATGAAAAAATTCTCAATCATGAACACCCTAAATTTCCTTGTGATGCTTCTTCCTCTGATCTCACTCAAGGAGCATGTACACCCACAGATACCGGCATAGCAGAAGATTTTCAACCACAATTTGCATGTGATGAAGCAAACAGTGCAGCTAATTCATATACAATGGGAATAGGATACTCCACAAATATATTTCAGGATGTAGAAATGCCTAGCTATGCTGACATGCATTATCAACTCCCATACACACCTTTGGTGATGGAAGATTTCCCACAAATAAATTTACCAGAGACAAAGACAACGAAGCCAGAAGTCACCGATGACTGCATGTTATATGACAGATACAGGGACTGCATGAATGGAACACTAGAAGAGATCATCTCTTTGTGTTGCACTCAAGATAATTCCGTCCCTTTTCCTATGCTAGAATGA 1047 0.4136 MAPMSLPPGFRFHPTDEELVAYYLERKITGRSIELEIIAEVDLYKCEPWDLPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATQAGYWKATGKDRPVHSQKKQVGMKKTLVYYRGRAPHGIRTNWVMHEYRLIESVPGTALSSLKDSYSLCRIFKKTIQIPAKPNNNEEEQPEIANKKESMWISEEQMLGEDSSGTEISREMENVDEKILNHEHPKFPCDASSSDLTQGACTPTDTGIAEDFQPQFACDEANSAANSYTMGIGYSTNIFQDVEMPSYADMHYQLPYTPLVMEDFPQINLPETKTTKPEVTDDCMLYDRYRDCMNGTLEEIISLCCTQDNSVPFPMLE* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1351 348 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Gso8g1351 348 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Gso8g1351 348 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Gso8g1351 348 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Gso8g1351 348 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 165 - -
Gso8g1351 348 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1351 Gso-Chr8 12876607 12881163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1351 1 337 NAC Transcription Factor Family AT1G54330 50.888 2.91e-101 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso8g1351 NAM 1.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1351 - - gmx:100790679 730.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1351 8 12876607 12881163 Gso8g1351 8 12876607 12881163 ECH
Gso8g1351 8 12876607 12881163 Gso15g2174 15 49968934 49973590 GST