Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1335 ATGATGCCAGGCAATGGACAGTTAACAGTTCCTCCGGGCTTCAGGTTCCACCCTACTGATGAGGAGCTTCTCTACTATTACCTGAGGAAGAAAGTTTCTTATGAAGCCATTGATCTTGATGTCATAAGAGAAGTAGATCTCAACAAACTTGAGCCTTGGGACCTCAATGATAAGTGTAGGATTGGGTCAGGGCCTCAGAATGAGTGGTATTTCTTCAGCCACAAGGACAAGAAGTACCCAACAGGAACCAGAACAAACCGAGCAACTACAGCTGGGTTTTGGAAAGCAACTGGGAGGGACAAGGCCATATACCACACTAATTCCAAGAGGATTGGCATGAGGAAAACCCTAGTTTTCTACACTGGTCGTGCTCCTCATGGCCAAAAGACTGATTGGATCATGCATGAGTATCGCCTTGATGAAGATGATGCTGATATTCAAGAAGATGGGTGGGTGGTATGCAGGGTGTTCAAAAAGAAAAGCCAAAACCGAGGTTTCCAGCAAGAAATTGAAGAAGAAGAGCACTTAACCACCCATATGAGAGCAAGTGGTCATTGCCAGGTCCTAGAGCCAAAGCATCATCACATGCAACAAGGACTCTATGATCACTACAACTTCGATGGGACAATGCATCTCCCACAGTTGTTCAGTCAAGAATCAGCAGTTGCACCACCCACAAATTCTTCCTTGGCCTCATCTATGAATGCCATGGACATCCTTCAGTGCTCTCAAAACCTCCTGAGGCTCACAACCACTACTGGCTGTGGACTTAATCTCATGCAGCAGCAACAACAACAAGGAGAGAGGTTCAGTGGTGACTGGTCTTTCTTGGACAAGCTACTAGCATCACACCATGGCATGGATCAAAGCAAATGTAACCCTCCTACTCATCATCAAGGTGCAAGTGTGGGAACTTCAGCTCAGAAATTCCCATTTCATTACCTTGGCTGTGACACCACCCATGATATCATGAAATTTTCCAAGTAG 987 0.4569 MMPGNGQLTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLNDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHTNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDEDDADIQEDGWVVCRVFKKKSQNRGFQQEIEEEEHLTTHMRASGHCQVLEPKHHHMQQGLYDHYNFDGTMHLPQLFSQESAVAPPTNSSLASSMNAMDILQCSQNLLRLTTTTGCGLNLMQQQQQQGERFSGDWSFLDKLLASHHGMDQSKCNPPTHHQGASVGTSAQKFPFHYLGCDTTHDIMKFSK* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1335 328 SUPERFAMILY NAC domain 5 159 IPR036093 GO:0003677|GO:0006355
Gso8g1335 328 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 312 - -
Gso8g1335 328 Gene3D NAC domain 19 164 IPR036093 GO:0003677|GO:0006355
Gso8g1335 328 Pfam No apical meristem (NAM) protein 11 139 IPR003441 GO:0003677|GO:0006355
Gso8g1335 328 ProSiteProfiles NAC domain profile. 10 159 IPR003441 GO:0003677|GO:0006355
Gso8g1335 328 PANTHER NAC (NO APICAL MERISTEM) DOMAIN TRANSCRIPTIONAL REGULATOR SUPERFAMILY PROTEIN-RELATED 6 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1335 Gso-Chr8 12600737 12604398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1335 2 328 NAC Transcription Factor Family AT1G79580 52.231 2.89e-116 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso8g1335 NAM 2.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1335 - - gmx:100789606 676.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1335 8 12600737 12604398 Gso15g2190 15 50379217 50382974 GST