Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1313 ATGGCGGATCCGAAAGCCTACTGGTGCCACGAGTGCGACATGAGCGTGTCCCTGACGCTCCCACCCTCCCCTCTCCTCTGCCCGCACTGCCACACCCACTTCCTCGAGCTCATGGACTCCCCAACCCTCTCCCAAAACGACACCGAATCCTCCCTCTTCGACGTCGTTTTCCAAGACGCTCTCTTACTCCTCAACCCCCCTTCCTCAAAACCCCGCCCCCTCCCCTCCCTCCACGTCACCCCCTCCCTCCTCTCCTCCCTCGACCCCAACGGCGTCGTTCGCTGCGCCGTCTGCAAAGACCAAATTACCCCCCACGCCGAAGCCAAACAATTACCCTGCAAACACTTATACCACTCCGATTGCATCACGCCGTGGCTCGAACTCCACGCCTCGTGTCCGCTATGCAGGTTTCGGTTGGAAGAAGAGGATGAAGAAGGCGGTGACGGCGTTATGACGAAGATCAGGAGGGAGATTATTGCCAGGCTGACGGTGCTGACGGAAGAGGATTTCTACGGGCTGAGGACCACGCTCAACCACATTGCCTCGCGCCACGCGCTCATCCAAGAGAACGAGAATCGCGGCGCCCAGATTGGGGAAACTCAAGGTGGCGATTCGGCTTGCTGA 624 0.5962 MADPKAYWCHECDMSVSLTLPPSPLLCPHCHTHFLELMDSPTLSQNDTESSLFDVVFQDALLLLNPPSSKPRPLPSLHVTPSLLSSLDPNGVVRCAVCKDQITPHAEAKQLPCKHLYHSDCITPWLELHASCPLCRFRLEEEDEEGGDGVMTKIRREIIARLTVLTEEDFYGLRTTLNHIASRHALIQENENRGAQIGETQGGDSAC* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1313 207 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 67 181 - -
Gso8g1313 207 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 4 44 - -
Gso8g1313 207 SUPERFAMILY RING/U-box 90 142 - -
Gso8g1313 207 Pfam Ring finger domain 95 136 IPR001841 -
Gso8g1313 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 152 IPR013083 -
Gso8g1313 207 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 4 44 - -
Gso8g1313 207 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 67 181 - -
Gso8g1313 207 SMART ring_2 95 135 IPR001841 -
Gso8g1313 207 Pfam zinc-ribbon 7 38 IPR039525 GO:0061630
Gso8g1313 207 ProSiteProfiles Zinc finger RING-type profile. 95 136 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1313 Gso-Chr8 12358713 12361295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1313 5 173 C3H Transcription Factor Family AT3G60080 31.915 1.05e-25 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1313 K11982 - gmx:100782164 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1313 8 12358713 12361295 Gso15g2207 15 50592913 50595725 GST