Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1299 ATGGTTAAAACTGTTGGAGTTCGGTTCCACCCTACTGGTGTTGAGTTAGTTGTGTACTTTCTGAAGAGGAAAGTGATGGGAAAAAAAATCTGCGATGGTTTCATTGCTGAACTTGACATATACAAGTATGCTCCTTGGGATCTCCCAGATAAGTCTTGTCTGAGAACTGGGGAATTGGAATGGTACTTCTTCTGCCCGCTAGAGAAGAAATATGGCAGTGGGAGCAAGATGAAGCGTGCTACTGAAATTGGGTATTGGAAAGCTACTGGGAAGGATAGAGTTGTTCAGCACAATAATCGAACTGTGGGGATGATAAAGACACTGATATTTCACACGGGTAAATCGCCTCGTGGCGAAAGAACTGATTGGGTTATGCATGAGCATAGGCTTGAAGATAAGGACCTCGCTGACAAAGGGATTGCTCAGGATTCCTATGTAGTCTGCAAGGTATTCCAAAAGGAAGGTCTTGGTCCCGGGAAGGGAACACACTATGCGAGACCATTTAATGAGGAAGAGTGGGACGATGAAGAAATTGGAATACCTTGTGCTGCTTTGACTGCACAAGTTCCCACCTTGCCTATTACATCTGATGGTTCTGTTGCAAATGACAATCATCTCCCTGCTAGTGGATGTATTGGGTCAGCATCCACATCATGTCTATCAGGATCAGTGCCTTCTCTGGGCACAGTAAATCCTACTGGTCCAAATGATCAAGCTGTTAATGATGATATTTTACCAATGCTTCATATTTTTAATGATGACAAATGGTTTGAGGAGATTTATAATCCTGGTCAGGAAAATATTGTTGAAGGTGCACCACCTTCAGATGATTTTTTTGCGGGCTTGGAAGACTACTTTGCTGGTTTCTCCTCTGGCCAGAATACAGGTGATGTTGGGAACTCTGATGACTTGGACTTCTTAGAGTTGAATGACCTAGACACCCCATTATTCTATCCGACCACACAACCTTGA 972 0.4342 MVKTVGVRFHPTGVELVVYFLKRKVMGKKICDGFIAELDIYKYAPWDLPDKSCLRTGELEWYFFCPLEKKYGSGSKMKRATEIGYWKATGKDRVVQHNNRTVGMIKTLIFHTGKSPRGERTDWVMHEHRLEDKDLADKGIAQDSYVVCKVFQKEGLGPGKGTHYARPFNEEEWDDEEIGIPCAALTAQVPTLPITSDGSVANDNHLPASGCIGSASTSCLSGSVPSLGTVNPTGPNDQAVNDDILPMLHIFNDDKWFEEIYNPGQENIVEGAPPSDDFFAGLEDYFAGFSSGQNTGDVGNSDDLDFLELNDLDTPLFYPTTQP* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1299 323 Pfam No apical meristem (NAM) protein 5 130 IPR003441 GO:0003677|GO:0006355
Gso8g1299 323 Gene3D NAC domain 12 156 IPR036093 GO:0003677|GO:0006355
Gso8g1299 323 PANTHER PLANT NAC DOMAIN PROTEIN 236 313 - -
Gso8g1299 323 PANTHER PLANT NAC DOMAIN PROTEIN 4 231 - -
Gso8g1299 323 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 231 - -
Gso8g1299 323 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 236 313 - -
Gso8g1299 323 SUPERFAMILY NAC domain 4 153 IPR036093 GO:0003677|GO:0006355
Gso8g1299 323 ProSiteProfiles NAC domain profile. 3 153 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1299 Gso-Chr8 12198992 12202246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1299 6 232 NAC Transcription Factor Family AT5G64060 55.947 1.49e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso8g1299 NAM 3.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1299 - - gmx:100778933 677.552