Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1293 ATGGACACCAACACTAGTACATTATTCACAAATGTGAACAGCACTTGGAATCTTGAAAAGATGGAAACAAATGAACAACAACAACAACATGATGACCATAGTATTATTCTCCAAGTTCAAGACCCTATGGGTTCTGGGATTTGGCCCATCAACAACTACCACAACCTTCTTCAAATGCATCAAACACCCAACACAACAACCTCATCCATGGTCATAGTACCACCCTCCTCCTCATCAGGGTTCCTTGGAGACATACTAGGTGTTCATCACAACCTTGAAGAAGATGAAGAGCCAGAAGAAGAGCTAGGAGCCATGAAGGAGATGATGTACAAGATCGCTGCTATGCAACCCGTGGACATCGACCCCGCCACGATTCGAAAACCAAAGAGAAGAAATGTTCGCATCAGTGATGACCCGCAGAGCGTGGCTGCACGCCACAGGAGAGAGAGGATCAGCGAGAAAATCCGAATCCTCCAAAGACTCGTTCCCGGTGGAACCAAAATGGACACTGCTTCAATGCTCGATGAAGCCATTCGATATGTTAAGTTCTTGAAGAGACAAATCAGGTTGCTTCAATCTATTCCTCAACCTTCACGTCAACCACCACAATGCATTGGTGTTGCCAGTACTACTCCTCATGCTAGTACCTTGTTGTTAGCCCCTTCTTCTGATTGGCCTTTTGCACCAAATGTGCTACCCCGTTCCACCGCCGTCAGCGCCTCCATGGACATGTCGGCTGGACTCGGATTCGACGGCCATGCTCATGCTTGTGATGGCTCCTCCAGCTTTAACCATCATGAGGTAATCAGTGAATAA 816 0.4706 MDTNTSTLFTNVNSTWNLEKMETNEQQQQHDDHSIILQVQDPMGSGIWPINNYHNLLQMHQTPNTTTSSMVIVPPSSSSGFLGDILGVHHNLEEDEEPEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSIPQPSRQPPQCIGVASTTPHASTLLLAPSSDWPFAPNVLPRSTAVSASMDMSAGLGFDGHAHACDGSSSFNHHEVISE* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1293 271 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 184 IPR011598 GO:0046983
Gso8g1293 271 SMART finulus 141 190 IPR011598 GO:0046983
Gso8g1293 271 Gene3D - 138 200 IPR036638 GO:0046983
Gso8g1293 271 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 21 252 - -
Gso8g1293 271 CDD bHLH_AtIND_like 136 193 - -
Gso8g1293 271 Pfam Helix-loop-helix DNA-binding domain 145 184 IPR011598 GO:0046983
Gso8g1293 271 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 21 252 IPR045843 GO:0003700|GO:0006355
Gso8g1293 271 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 201 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1293 Gso-Chr8 12156658 12158195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1293 102 203 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 87.255 1.58e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso8g1293 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1293 - - gmx:100777351 513.842