Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1284 ATGACAGATCCTAAGTCCAATTTATACACTGAAACCTTCAACTTCATGCCCCTCTATTCTCACCTCTCTTCTTTTAGTACTTCTCAATCAAACTTATTCTCTTCTTACTCAAACAACAACACTTTCGCCATTCAATCTGAAACCTCTTCCTCTTATGCTCCTCCTTCTCCTCCTCTCAGAGAAGCCCTTCCTCTCATAAACAACATAAGCCTCAGAAAACAAAAGGAAAAAAATGAACCATCAAAGAGTGGTGGTGGTATGGTTGAAGAGGAAGGAGGAAAGAAAAGGGACATGGATGAGACGACCCTTTTGATGACTAGTACTACTACTGAAGAGGGTGATGCTGAAACTGTGACAGTAGCACTGCAAATAGGGCTTCCTAGCGTGGCTGCTTCTGATGATCTTAATGGGTCAAGGAAGATCCCTGCAGCTTGTGCACAAATGAATGAAAAGGAGGATGCGAGGAGTGTGATTTCTGGACACCCTTTTGATAGATTGAACAAGGTTCAGTATTGGATTCCCACCCCTTCTCAGATTCTCATTGGTCCTACTCAGTTTTTGTGTCATGTGTGCTCTAAGAGTTTCAACAGATATAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATATAGAAAGGGCCCTGATTCTCTAAAAGGAACACAACCATCAGCAATGCTACGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATAGACCACCCAAGAGCAAGGCCTCTGAAGGACTTCAGAACCCTTCAAACACACTACAAGAGAAAACACGGCATTAAACCCTACATGTGCAGAAAATGTGACAAAACGTTTGCGGTGAAAGGTGATTGGAGGACACACGAGAAGAACTGTGGCAAAATATGGTACTGTTTATGTGGGTCTGATTTCAAACACAAAAGATCTCTAAAGGATCACATAAAGGCCTTTGGCCATGGCCACGGTGCTGTTGACATTGATTGCATGCAAGAAGATGAAGCGGCCTCCGAAATTGAACATGATGGGGATATCTCAATGTGA 1041 0.4304 MTDPKSNLYTETFNFMPLYSHLSSFSTSQSNLFSSYSNNNTFAIQSETSSSYAPPSPPLREALPLINNISLRKQKEKNEPSKSGGGMVEEEGGKKRDMDETTLLMTSTTTEEGDAETVTVALQIGLPSVAASDDLNGSRKIPAACAQMNEKEDARSVISGHPFDRLNKVQYWIPTPSQILIGPTQFLCHVCSKSFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPSAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCDKTFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGHGHGAVDIDCMQEDEAASEIEHDGDISM* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1284 346 PANTHER ZINC FINGER PROTEIN WIP2 1 341 IPR043584 GO:0003700|GO:0010468
Gso8g1284 346 SUPERFAMILY beta-beta-alpha zinc fingers 179 208 IPR036236 -
Gso8g1284 346 SMART c2h2final6 270 290 IPR013087 -
Gso8g1284 346 SMART c2h2final6 296 319 IPR013087 -
Gso8g1284 346 SMART c2h2final6 186 208 IPR013087 -
Gso8g1284 346 ProSiteProfiles Zinc finger C2H2 type domain profile. 186 213 IPR013087 -
Gso8g1284 346 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 1 341 - -
Gso8g1284 346 Gene3D Classic Zinc Finger 183 291 - -
Gso8g1284 346 MobiDBLite consensus disorder prediction 70 97 - -
Gso8g1284 346 SUPERFAMILY beta-beta-alpha zinc fingers 254 290 IPR036236 -
Gso8g1284 346 MobiDBLite consensus disorder prediction 72 97 - -
Gso8g1284 346 ProSitePatterns Zinc finger C2H2 type domain signature. 188 208 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1284 Gso-Chr8 12003415 12005773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1284 1 339 C2H2 Transcription Factor Family AT3G57670 51.604 4.85e-121 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso8g1284 zf-C2H2_6 6.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1284 - - gmx:100818131 694.115