Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1282 ATGTCCAACAGGTTTTGCAAGTTCTATGCCCGTGGAGCATGTTTGAAGGGGGATCAATGTGATTTTGCTCATGAGAAAAAGGATGATATTTGCAGCTATTATCAGAAAGGATTCTGTGCATATGGTAGTAGATGCAGATATAAGCATGTCAAAGCTTCCCAACCGTCATCTTCAGCAAATGGACGCCATTCTCCTGTTTTGGATCCTGTGGTGAATCATATCACTAAAGGAACATCAAGTTGGGTTCTGAAGGCTGTGAAGTCATCTTCATCGGACAAGCGTGCAAGGAGCTCGCAAAAAAAGAATCCAGCCTCTCTTGGAAATGATGTTGGTCAATCCAGTACTAGTAGTGCTATACCATCTGAACATTTGTTTTGTGCATTTGCTGCTGCCAACTGCCCCCTTGAAGATAAATGTTCTCGCATTCATGGAAATCAGTGCTTATACTGTAGAAAATTTTGCTTACATCCTTCTGATTGGAAGGAAAAAGAAAATCATTTGAGGACTTGTGAGAAAAAGGGAAAATACCTTAAGGCTTTGGAAGATAGTCAAGAAGTAGAGTGCAATGTTTGTTTGGAACGTGTTCTGTCCAAACCTAAACCAGCTGATTGTAAGTTTGGGCTGCTTCCTGAATGTGACCATGCTTTCTGTTTATCCTGTATCCGCAATTGGCGTAATAGTGCTGCCCCAACATCTGGAATGGACATCGGTAATGCTGGCACTGCTAATACAGTCAGAACCTGTCCTGTTTGTCGCAAACTATCATATTTTGTCATTCCAAGTGGTATTTGGTATTCTACTAAGGAAGAAAAACAGGAAATTATCAACAACTACAAGGCAAACTGCAAATTAATTGATTGCAAGCATTTTAACTTTGGAAATGGGAATTGTCCATTCGGGGCTAGTTGCTTCTACAAGCATACAGTGAAGCCTGGCTCTTACACATGGATACATCACAGGCCACCACCTCAGTGTAGACAGAACCATTTTGATATGTATGACATGGACATGCTCCAAGATGTTGACTTAACAAGTGCAGAATATTTTTCCATCATGAGGGGTTCAGACTTTTTTGATGATATGGATCCATTTGAGATGATGGATATATCTCATAGGCTTGCTGGTGACTCAGGTCCTTGTTTAGGTCTTTTTGATTCTGATGAGGAGGACTTGGATATTTTTCAGATGGCTGCATTGTCGGAAGCGCTTGCTTCTGGTGTGGATGATTTTGGTCCCGAAGATATTGGTAATGAAGATTTCAATCCTATGGAGGCTGCCTTGTTACCAATGATGATGCATTGTAATATGGAAGATGAAGATGATGATGAGGAAGAAGAATACAGTGATGAAGACTACTAG 1359 0.4084 MSNRFCKFYARGACLKGDQCDFAHEKKDDICSYYQKGFCAYGSRCRYKHVKASQPSSSANGRHSPVLDPVVNHITKGTSSWVLKAVKSSSSDKRARSSQKKNPASLGNDVGQSSTSSAIPSEHLFCAFAAANCPLEDKCSRIHGNQCLYCRKFCLHPSDWKEKENHLRTCEKKGKYLKALEDSQEVECNVCLERVLSKPKPADCKFGLLPECDHAFCLSCIRNWRNSAAPTSGMDIGNAGTANTVRTCPVCRKLSYFVIPSGIWYSTKEEKQEIINNYKANCKLIDCKHFNFGNGNCPFGASCFYKHTVKPGSYTWIHHRPPPQCRQNHFDMYDMDMLQDVDLTSAEYFSIMRGSDFFDDMDPFEMMDISHRLAGDSGPCLGLFDSDEEDLDIFQMAALSEALASGVDDFGPEDIGNEDFNPMEAALLPMMMHCNMEDEDDDEEEEYSDEDY* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1282 452 ProSiteProfiles Zinc finger RING-type profile. 188 252 IPR001841 -
Gso8g1282 452 Pfam RNA-binding, Nab2-type zinc finger 6 24 - -
Gso8g1282 452 Pfam RNA-binding, Nab2-type zinc finger 286 307 - -
Gso8g1282 452 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 27 50 IPR000571 GO:0046872
Gso8g1282 452 Pfam Zinc finger, C3HC4 type (RING finger) 188 251 IPR018957 GO:0046872
Gso8g1282 452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 285 IPR013083 -
Gso8g1282 452 PANTHER MAKORIN-RELATED 1 452 IPR045072 -
Gso8g1282 452 Gene3D - 1 60 - -
Gso8g1282 452 PANTHER MAKORIN RING-ZINC-FINGER PROTEIN 1 452 - -
Gso8g1282 452 MobiDBLite consensus disorder prediction 100 114 - -
Gso8g1282 452 ProSiteProfiles Zinc finger C3H1-type profile. 1 24 IPR000571 GO:0046872
Gso8g1282 452 SUPERFAMILY RING/U-box 180 258 - -
Gso8g1282 452 CDD RING-HC_MKRN 188 252 - -
Gso8g1282 452 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Gso8g1282 452 SMART ring_2 188 251 IPR001841 -
Gso8g1282 452 ProSiteProfiles Zinc finger C3H1-type profile. 25 52 IPR000571 GO:0046872
Gso8g1282 452 ProSiteProfiles Zinc finger C3H1-type profile. 281 310 IPR000571 GO:0046872
Gso8g1282 452 ProSitePatterns Zinc finger RING-type signature. 212 221 IPR017907 -
Gso8g1282 452 SUPERFAMILY CCCH zinc finger 24 49 IPR036855 GO:0046872
Gso8g1282 452 SMART c3hfinal6 281 309 IPR000571 GO:0046872
Gso8g1282 452 SMART c3hfinal6 27 51 IPR000571 GO:0046872
Gso8g1282 452 SMART c3hfinal6 2 26 IPR000571 GO:0046872
Gso8g1282 452 SMART c3hfinal6 121 145 IPR000571 GO:0046872
Gso8g1282 452 MobiDBLite consensus disorder prediction 90 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1282 Gso-Chr8 11970232 11981982 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso8g1282 zf-C3HC4 1.1e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1282 K15687 - gmx:100819577 916.761