Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1281 ATGTCTAAGAGGTTTCTTTGCAAGTTCTTTGCTCATGGAGCTTGTCTGAAAGGGGAGCATTGTGAATTTTCTCATGACTGGAAAGATCCTCCAAATAATGTATGCACATTTTATCAGAAAGGAGTCTGTGCTTATGGTAGTCGCTGCAGATATGATCATGTCAAAGCTTCTCGAGAGCAATCTTCTGCTCCATCTTCTTCAGTAATCGAACCCCAGACCCTGGTTTCAGATACTGTTGCTTTTGGAAATACTAGAGCTGCATCAAATGGTGTTGCTACAGGGGCAGAGTTTTCTCTTTCCAGTAGTCCTTACCTTCTTCCTAGTGAACCGGCTTGGAATCGAGAACTGGTTTGGAATCAAGAATTTGGGTATCATGAACCTTTATGGGAAGACAATGTTGGTCAATCAATAATCACTTCACCTTCTGAGCTTTCAATTTGTTCATTTGCTGGAGCTGGAAACTGTCCACGAGGCGAAAAATGCCCTCATATTCATGGGGATCTATGTCCCACCTGTGGAAAACATTGCTTGCATCCTTTCCGACCTGAGGAAAGAGAAGAACATATGAAGACTTGCGAAAATAAGCGTAAGCATCTTGAGGCATTGAAACAAAGTCAAGAAATTGAATGCAGTGTTTGCCTGGAGCATGTTCTGTCAAAGCCTACAGCAGCTGAGTGTAAGTTTGGGCTGCTATCAGAATGTGATCATCCATTCTGCATATCCTGTATTAGGAATTGGCGTAGTAGTAACCCAACATTGGGGATGGATGTTAATAGCACATTGAGGGCATGTCCTATTTGTCGTAAGCTGTCGTACTTTGTCATTCCAAGTGTCATTTGGTACTCAACAACTGAAGAAAAACAAGAAATCATTAACAACTACAAGGCAAAGCTCAAGTCAATTGATTGCAAGCACTTTGACTTTGGGGAAGGAAACTGCCCTTTTGGAACTAGTTGTTTCTACAAGCATGCATTTCGAGATGGCCGTCTGGAGCAGGTAGTTTTGCGACATCTAGGGGCTGCAGAGGGTGATACTGTAATTGCAAAAGACATCAGGATACTTGCTTAA 1068 0.4232 MSKRFLCKFFAHGACLKGEHCEFSHDWKDPPNNVCTFYQKGVCAYGSRCRYDHVKASREQSSAPSSSVIEPQTLVSDTVAFGNTRAASNGVATGAEFSLSSSPYLLPSEPAWNRELVWNQEFGYHEPLWEDNVGQSIITSPSELSICSFAGAGNCPRGEKCPHIHGDLCPTCGKHCLHPFRPEEREEHMKTCENKRKHLEALKQSQEIECSVCLEHVLSKPTAAECKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVIPSVIWYSTTEEKQEIINNYKAKLKSIDCKHFDFGEGNCPFGTSCFYKHAFRDGRLEQVVLRHLGAAEGDTVIAKDIRILA* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1281 355 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 69-LIKE 1 353 - -
Gso8g1281 355 PANTHER MAKORIN-RELATED 1 353 IPR045072 -
Gso8g1281 355 SMART c3hfinal6 1 27 IPR000571 GO:0046872
Gso8g1281 355 SMART c3hfinal6 142 167 IPR000571 GO:0046872
Gso8g1281 355 SMART c3hfinal6 297 325 IPR000571 GO:0046872
Gso8g1281 355 SMART c3hfinal6 30 55 IPR000571 GO:0046872
Gso8g1281 355 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Gso8g1281 355 Gene3D - 32 168 - -
Gso8g1281 355 CDD RING-HC_MKRN 210 268 - -
Gso8g1281 355 Coils Coil 185 209 - -
Gso8g1281 355 Pfam Zinc finger, C3HC4 type (RING finger) 210 267 IPR018957 GO:0046872
Gso8g1281 355 ProSiteProfiles Zinc finger C3H1-type profile. 297 326 IPR000571 GO:0046872
Gso8g1281 355 ProSiteProfiles Zinc finger RING-type profile. 210 268 IPR001841 -
Gso8g1281 355 Gene3D - 1 31 - -
Gso8g1281 355 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Gso8g1281 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 305 IPR013083 -
Gso8g1281 355 ProSiteProfiles Zinc finger C3H1-type profile. 1 28 IPR000571 GO:0046872
Gso8g1281 355 Pfam CCCH-type zinc finger 34 53 IPR041367 -
Gso8g1281 355 SUPERFAMILY RING/U-box 199 274 - -
Gso8g1281 355 SUPERFAMILY CCCH zinc finger 4 26 IPR036855 GO:0046872
Gso8g1281 355 SUPERFAMILY CCCH zinc finger 32 53 IPR036855 GO:0046872
Gso8g1281 355 SMART ring_2 210 267 IPR001841 -
Gso8g1281 355 ProSitePatterns Zinc finger RING-type signature. 234 243 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1281 Gso-Chr8 11959611 11968402 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso8g1281 zf-C3HC4 1e-06 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1281 K15687 - gmx:100817071 745.732