Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1275 ATGGACAAGGGGGTGCCACCTAGCCTCTTCGTCAATGACGGTTCTTTCATGGAGAGGTTCAAGCAACTTCAGCAAGAGCAGGAGAAAGGGAAGAATGTCAAATTGGAGGATTCTAAACCAATTAAGGTTAATTCAGGGTCTTTGTCTCCCAATCACTCCATTACCAAAACGCCCGTGGACTTGAAGGTTAATGACACAAGAAAAACATCTCAGGGTGGTTCCAGTGGCAAGCTAGCTTTCAGTTTAAAACAAAAGTCAAAGCTGGTGCCACCCCCTGTTAAGTTAAGTGTTGATGAGGATGAAGAAACTGAAGCTGGGTATGTTTCAAATGATGCACCACTAAAACGGCAAAAGTTAGGCCAGGAGGAAGGCATTGACCAATCATCAAGACAACTTGATGTTGCACCTCATTCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGACAAACTGGCAAGTTTTGTGGCTAAAAATGGAAGGCAATTTGAGGATGTAACACGCCAAAAAAATCCTGGGGATACACCTTTCAAATTTTTGTTTGATGAGAGATGTGCTGAATACAAGTATTATGAATATCGGCTTGCTCAAGAAGAAGATGCTCTTGGGCAATCAAGGGAATCACAGGTGCCTCGTAACGGGGGTACAAGCACTTCATCTTCCAAACAGGCTAGTGGTCATCAGAGATCATCTCAGCAGCATACATACCAAATTCCTGCATCTGCTTTATATGAAAGTCCTGACAATCCAAGAGCTTCTGGATTTTCAATTCAAACATCACCAGTAGGAAGCAGTGAGCCCAGTGGTTCATCAAATGCTGATTCTTTGGCGCTAATGGAGTTCTACATGAAAAAAGCTGCACGGGAGGAGAAGTATAAACAACCTAAGCATTCAAAAGATGAGATGCCCCCTCCTGCTTCTCTTCTAGGCAAAAAAGGCCATCACATGGGTGATTTCATTCCTCCAGAAGAACTCGAGAAGTTCTTGGCTACCTGTAATGATGCTGCAGCGCAGAAAGCTGCTAGGGAGGCTGCAGAGAGGGCTAAGATTCAGGCTGATAATGTAGGCCACCGGCTCCTGTCAAAAATGGGTTGGAAAGAAGGTGAGGGTTTGGGTGGATCCAGGAAGGGTATTGCGGATCCTATCATGGCTGGTAATGTTAAGAAGAATAACTTGGGGGTTGGTGCTCAGGAACCTGGGGAGGTGAGTGCAGAGGATGACATATACGAGCAGTACAAAAAGCGGATGATGCTTGGCTACCGTTACCGACCCAATCCCCTGAACAATCCCCGCAAGGCTTATTACTGA 1305 0.4536 MDKGVPPSLFVNDGSFMERFKQLQQEQEKGKNVKLEDSKPIKVNSGSLSPNHSITKTPVDLKVNDTRKTSQGGSSGKLAFSLKQKSKLVPPPVKLSVDEDEETEAGYVSNDAPLKRQKLGQEEGIDQSSRQLDVAPHSPSDPTVKKVADKLASFVAKNGRQFEDVTRQKNPGDTPFKFLFDERCAEYKYYEYRLAQEEDALGQSRESQVPRNGGTSTSSSKQASGHQRSSQQHTYQIPASALYESPDNPRASGFSIQTSPVGSSEPSGSSNADSLALMEFYMKKAAREEKYKQPKHSKDEMPPPASLLGKKGHHMGDFIPPEELEKFLATCNDAAAQKAAREAAERAKIQADNVGHRLLSKMGWKEGEGLGGSRKGIADPIMAGNVKKNNLGVGAQEPGEVSAEDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1275 434 MobiDBLite consensus disorder prediction 23 144 - -
Gso8g1275 434 ProSiteProfiles G-patch domain profile. 351 398 IPR000467 GO:0003676
Gso8g1275 434 MobiDBLite consensus disorder prediction 201 241 - -
Gso8g1275 434 Pfam Surp module 146 196 IPR000061 GO:0003723|GO:0006396
Gso8g1275 434 SMART surpneu2 145 199 IPR000061 GO:0003723|GO:0006396
Gso8g1275 434 PANTHER SURP AND G PATCH DOMAIN-CONTAINING 1 3 434 - -
Gso8g1275 434 ProSiteProfiles SURP motif repeat profile. 147 190 IPR000061 GO:0003723|GO:0006396
Gso8g1275 434 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 3 434 IPR040169 -
Gso8g1275 434 Pfam G-patch domain 352 395 IPR000467 GO:0003676
Gso8g1275 434 Gene3D Surp module 119 201 IPR035967 GO:0003723|GO:0006396
Gso8g1275 434 MobiDBLite consensus disorder prediction 23 38 - -
Gso8g1275 434 MobiDBLite consensus disorder prediction 198 272 - -
Gso8g1275 434 MobiDBLite consensus disorder prediction 42 81 - -
Gso8g1275 434 MobiDBLite consensus disorder prediction 250 272 - -
Gso8g1275 434 SMART G-patch_5 349 396 IPR000467 GO:0003676
Gso8g1275 434 SUPERFAMILY Surp module (SWAP domain) 131 196 IPR035967 GO:0003723|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1275 Gso-Chr8 11834851 11841844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1275 347 407 C2H2 Transcription Factor Family AT5G26610 48.387 7.36e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1275 K13096 - gmx:100813337 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1275 8 11834851 11841844 Gso15g2240 15 51067183 51074071 GST