Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1274 ATGAGTGTTATGTATAGTCCTGTTCTCAATTACTCAGATGTGGAGCATCAGCTAAGGAAAAACCAAGACATGGATTCAAGTATTGGACATCCACAACAACACTGTCACCAACCCAATTCTGGACTATTGAGGTATTGTTCTGCTCCAAGCTCATTGCTGGCAAGCCTCATTGACAACACCATTCATGGCTGTGTCAACGAGGAATCGTTCACAAGTGAGAATCATCATCATCATCAGCAGCAGCAGCAGCAGCATTATCTTCCATCTACAAGTTCAGAAATGGAGACCATGTTATCCAAATTGCTACCATCTAACAATGGATGGAGCAATTCAGAAGCTTTGCAAGAATTTGGAGGCAAGCCTGTGAAGCAGGAAATAGGGGAATCTATTCCACAAGAGCCACCACAACAGAATGGTTATTCTTATGGTGGCTCTCAGTTGATTTACCAATCTCAGCAAATTCAAGGCTTGCCAAATGGTGGATCTTCCAGTGCTTCTGGCAGTGCTTTTGATGGCTCTTTTGGTGTGGTGCACTCCATGGCTTCAGAGGACTCCATTCAATCTAAAATGGGTATCAGGAATTGCTCCAATCTCTTTAGGCAAAAGAGTTCCCCTGCTGGATTTTTCTCCATTGAAAATGATCTTGCAGCATTGAGAGAAGTAGGAAGCTTTAAAGCCGATGATGTTTCAAATGGACTAGTTACTGCATCAACTGGTGGGTTGCATAGTTCTCATACTTTCTCATCTAGGCCATCTTCATGCTTGAAACGGTTGCCACAAATAGCCGAAAATGGAAATGAAAGCCTAGAAGAAAATTGTGACCAAAGTAGAAACCTAGTAAATGACAATGGTAGCTCAAAATGTTACATACCTAGCTTCACCAATGAATTATGGGAAAGTTCTGCATTCAATGCCCCAAAAACAGAGAATGAAGATGAAATCATGTTTTCCACTTCAAATATTTTGGAATCTCAGGAAGCAGATTTCAGCTTTCAAAATCTGGGTTTGACTCACCATTTGAGTCTACCTAGCTCTTCTACTAAGATGTCATCCATAGAAAAGTTTCTTCAGATTCAAGGTTCTGTTCCTTGTAAAATTCGAGCCAAAAGAGGCTTTGCCACTCACCCAAGAAGTATTGCAGAGAGGGTAAGAAGAACAAGAATTAGTGAAAGAATCAAGAAACTGCAAGACCTTTTTCCAAAATCAGAAAAGCAAACAAGCACAGCAGATATGTTAGATTTGGCAGTTGAGTATATTAAGGACCTGCAGCAAAAAGTTAAGATACTCTCAGATTGTAAGGCAAAGTGCAAATGTACAAGTAATGAGAAGCATTACACTAGAACTTGTGCTTGA 1353 0.4043 MSVMYSPVLNYSDVEHQLRKNQDMDSSIGHPQQHCHQPNSGLLRYCSAPSSLLASLIDNTIHGCVNEESFTSENHHHHQQQQQQHYLPSTSSEMETMLSKLLPSNNGWSNSEALQEFGGKPVKQEIGESIPQEPPQQNGYSYGGSQLIYQSQQIQGLPNGGSSSASGSAFDGSFGVVHSMASEDSIQSKMGIRNCSNLFRQKSSPAGFFSIENDLAALREVGSFKADDVSNGLVTASTGGLHSSHTFSSRPSSCLKRLPQIAENGNESLEENCDQSRNLVNDNGSSKCYIPSFTNELWESSAFNAPKTENEDEIMFSTSNILESQEADFSFQNLGLTHHLSLPSSSTKMSSIEKFLQIQGSVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQDLFPKSEKQTSTADMLDLAVEYIKDLQQKVKILSDCKAKCKCTSNEKHYTRTCA* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1274 450 MobiDBLite consensus disorder prediction 71 95 - -
Gso8g1274 450 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 31 442 - -
Gso8g1274 450 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 372 422 IPR011598 GO:0046983
Gso8g1274 450 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 31 442 - -
Gso8g1274 450 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 375 438 IPR036638 GO:0046983
Gso8g1274 450 MobiDBLite consensus disorder prediction 81 95 - -
Gso8g1274 450 Gene3D - 374 445 IPR036638 GO:0046983
Gso8g1274 450 Pfam Helix-loop-helix DNA-binding domain 378 423 IPR011598 GO:0046983
Gso8g1274 450 SMART finulus 378 428 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1274 Gso-Chr8 11822059 11825163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1274 34 428 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 34.524 5.33e-46 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso8g1274 HLH 3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1274 - - gmx:100812802 853.588