Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1267 ATGGCTTCTCTTCACTCTTCTTTCCTCCTTACATCAAATTTTCTTTCCCTCACAACCCCATCAAGTTTTCCCACTCACATTCTCTTTCCCATGAGACTCTCCACGACCCACTTGCGACCCCTTCTTCTCACCACACGACACGGTTTCGGGAGATCACCCTTTGCCGCGGTGGCGGAACAGGCGGCCACCGCGACCGAGGCGGCCGTGAGGAGGCTCTACGCTGGCAACATTCCCCGCACCGTCACCAACAACGAGCTTGCCAAGATTGTTCAAGAACATGGTGTTGTTGAGAAAGCTGAGGTTATGTATGATAAATACTCTGGAAGGAGCCGCCGCTTTGCATTTGTTACGATGAAAACTGTTGAGGATGCAACTGCTGTGATTGAGAAACTTAACGGCACTGAAATTGGAGGACGTGAGGTCAAAGTAAACGTAACGGAAAAACCTTTATCAACACCAGATTTGCCTTTACTCCAAGCTGAGGAATCTGAATTTATTGACAGTCCCCACAAGGTGTATGTGGGAAATCTGGCCAAAACAGTAACAACTGATACTCTTAAAAACTTTTTTTCTGAGAAGGGAAAAGTTCTTAGTGCCAAGGTTTCACGGGTCCCTGGTACCTCAAAATCCAGTGGATATGGGTTTGTTACTTTTTCGTCAGAAGAGGATGTAGAAGCTGCAATCTCATCTTTCAACAATTCTTTGTTAGAAGGCCAAACAATCCGTGTAAACAAGGCATAG 741 0.4629 MASLHSSFLLTSNFLSLTTPSSFPTHILFPMRLSTTHLRPLLLTTRHGFGRSPFAAVAEQAATATEAAVRRLYAGNIPRTVTNNELAKIVQEHGVVEKAEVMYDKYSGRSRRFAFVTMKTVEDATAVIEKLNGTEIGGREVKVNVTEKPLSTPDLPLLQAEESEFIDSPHKVYVGNLAKTVTTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEDVEAAISSFNNSLLEGQTIRVNKA* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1267 246 SUPERFAMILY RNA-binding domain, RBD 66 148 IPR035979 GO:0003676
Gso8g1267 246 SUPERFAMILY RNA-binding domain, RBD 164 246 IPR035979 GO:0003676
Gso8g1267 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 172 242 IPR000504 GO:0003723
Gso8g1267 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 142 IPR000504 GO:0003723
Gso8g1267 246 PANTHER 30S RIBOSOMAL PROTEIN 2, CHLOROPLASTIC 1 246 - -
Gso8g1267 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 170 246 IPR000504 GO:0003723
Gso8g1267 246 PANTHER OS02G0815200 PROTEIN 1 246 - -
Gso8g1267 246 Gene3D - 52 154 IPR012677 -
Gso8g1267 246 SMART rrm1_1 171 244 IPR000504 GO:0003723
Gso8g1267 246 SMART rrm1_1 71 144 IPR000504 GO:0003723
Gso8g1267 246 CDD RRM_HP0827_like 71 148 - -
Gso8g1267 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 148 IPR000504 GO:0003723
Gso8g1267 246 Gene3D - 158 246 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1267 Gso-Chr8 11747681 11755755 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1267 68 246 Eukaryotic Initiation Factors Gene Family AT2G23350 31.868 1.04e-17 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1267 K13126 - gmx:100811197 423.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1267 8 11747681 11755755 Gso15g2234 15 50987921 50992434 GST