Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1261 ATGAGAACTAAAATTGTTTCTCTCCTCTGTCTTCTATCTCTTGCTACCCTTTTGGCTAGTGGCACTGAAAGTGCATCTCCAATCAGCCTGAAGCCAAGCCACAAGGCTTCATCATTCAACAGAAGCCTTTTTCCTTCCACTTTTCTCTTTGGAATAGGTTCTTCCGCATACCAGGTAGAAGGAGCAGCAAATGAAGATGGAAGAGGACCAAGCATATGGGACAACTTCACTAAAGAGCATCCTGAAAAGATTTGGGATCAAAGCACCGGAGATGTAGGAGCTGATTTTTATCATCGGTACAAGAGTGACATAAAATTGGTGAAAGACATTGGGTTGGACTCCTTCAGATTCTCCATCTCTTGGACAAGAATATTTCCCAAGGGGAAAGGAGCCGTTAATGGCTTGGGGGTTGAATTCTACAACAATCTCATCGATGAGGTTCTATCAAATGATTTAAAACCTTTTGTTACTCTTTTCCACTGGGACTTCCCACAAGCTCTTGAAGATGAGTATGGAGGATTTCGTAGTTCTAATGTAGTGGAGGATTTTCGTAAATATGCTGACTTTTGCTACAAGACCTTTGGAGACAGAGTGAAACATTGGGTCACTATAAATGAACCCTTATCATATAGCATCAATGGCTATAATGGTGGCACCTTTGCACCAAGTAGATGTTCTAAGTACGTTGCCAATTGCAGTGCTGGTGACTCATCCATTGAACCCTACATTGTTGGTCACTACTTATTACTTGCTCACGAGGCTGCTGCCACATTGTACAAGAAAAAATATCAGGCTCGTCAAAAAGGACAAATTGGGATCACCCTTCCGACTCACTTCTTTTTGCCAAAATCAAATAGTGTTGCCGATAAACAAGCAGCAAATCGAGCTCTGGACTTTTTCTTTGGCTGGCATGCTCGTCCAGTTATATTTGGTGACTATCCTGAGAGTATGAAATCTTCAGTGGGTTCTAGACTACCTAAATTCACAAAAGCTCAATCTGAAGGTCTCAAAAGTTCCATTGATTTTCTTGGTGTAAATTATTACACCACATATTATGCAGAAAATGCTGCACCTGTAAGAGCCAACAGGACCTTCAACACAGATATGCTAGTCACTCTCAGTACGGAAAAGAATGGTGTGGCTATTGGGACCCCGACTGATTTGGATTGGCTCTATATCTATCCGAAGGGAATTCATCTTCTTATGGTACACATAAAGGATAAATACAAGAATCCAAATATTTACGTCAATGAAAATGGCATTGCTGAAGCAAGGAATGACTCAATACCAGTCGATGAAGCCCTTAATGATGGTATCAGGATTAGATACCTTAAGAGCCACCTTAGACTCCTTCTTCAAGCGATCAAGGAAGGTGTTAATGTGAAGGGCTACTATGCATGGTCATTTTCGGACAGCTTTGAATGGGATGCTGGTTACACAGTTCGATTTGGTCACGTATATGTTGATTACAACAACAATTTGAAAAGATACCTCAAGTCCTCTGCGTTTTGGCTGAAAAAGTTCCTTCTCAACAACAATAATAAAGTCTTATCCTATTAG 1560 0.4083 MRTKIVSLLCLLSLATLLASGTESASPISLKPSHKASSFNRSLFPSTFLFGIGSSAYQVEGAANEDGRGPSIWDNFTKEHPEKIWDQSTGDVGADFYHRYKSDIKLVKDIGLDSFRFSISWTRIFPKGKGAVNGLGVEFYNNLIDEVLSNDLKPFVTLFHWDFPQALEDEYGGFRSSNVVEDFRKYADFCYKTFGDRVKHWVTINEPLSYSINGYNGGTFAPSRCSKYVANCSAGDSSIEPYIVGHYLLLAHEAAATLYKKKYQARQKGQIGITLPTHFFLPKSNSVADKQAANRALDFFFGWHARPVIFGDYPESMKSSVGSRLPKFTKAQSEGLKSSIDFLGVNYYTTYYAENAAPVRANRTFNTDMLVTLSTEKNGVAIGTPTDLDWLYIYPKGIHLLMVHIKDKYKNPNIYVNENGIAEARNDSIPVDEALNDGIRIRYLKSHLRLLLQAIKEGVNVKGYYAWSFSDSFEWDAGYTVRFGHVYVDYNNNLKRYLKSSAFWLKKFLLNNNNKVLSY* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1261 519 PANTHER GLYCOSYL HYDROLASE 9 510 IPR001360 GO:0004553|GO:0005975
Gso8g1261 519 SUPERFAMILY (Trans)glycosidases 35 509 IPR017853 -
Gso8g1261 519 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 48 62 IPR033132 -
Gso8g1261 519 Gene3D Glycosidases 24 511 - -
Gso8g1261 519 PRINTS Glycosyl hydrolase family 1 signature 339 353 IPR001360 GO:0004553|GO:0005975
Gso8g1261 519 PRINTS Glycosyl hydrolase family 1 signature 414 422 IPR001360 GO:0004553|GO:0005975
Gso8g1261 519 PRINTS Glycosyl hydrolase family 1 signature 437 448 IPR001360 GO:0004553|GO:0005975
Gso8g1261 519 PRINTS Glycosyl hydrolase family 1 signature 458 475 IPR001360 GO:0004553|GO:0005975
Gso8g1261 519 PRINTS Glycosyl hydrolase family 1 signature 482 494 IPR001360 GO:0004553|GO:0005975
Gso8g1261 519 PANTHER BETA-GLUCOSIDASE 17 9 510 - -
Gso8g1261 519 Pfam Glycosyl hydrolase family 1 42 512 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1261 Gso-Chr8 11669594 11676942 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1261 1 509 Glycoside Hydrolase AT5G44640 49.903 6.83e-179 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1261 K22279 - gmx:100812639 1035.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1261 8 11669594 11676942 Gso15g1827 15 37201225 37209219 PCT
Gso8g1261 8 11669594 11676942 Gso8g1933 8 19281260 19288735 PCT