Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1257 ATGTGGAGATTTAAGCCATTCAGTCACAAAGAGCAGACTGGTCTTGAAGGCCGCACTATAGATGTTGGCAATCTTAAAATACATGTCATTAAGGCCATTGCCGAAGGAGGGTTCTCTTGTGTCTACCTAGCTCGAGATGCTGTACATATGTCAAAGCAATATGCTTTGAAGCACATGATATGCAATGACGAAGAATCACTTGGATTGGTAAAGAAGGAGATATCTGTGATGAAGGTGCTGGCAGGACATCCCAATGTTGTCACACTTCATGCACATGCCATCTTCGATATGGGTAGGACAAAAGAAGCATTCCTTGTGATGGAGTTTTGTGAGAGGTCTCTGGTTAATGTGCTAGAGAGCCGAGGAGCTGGTTATTTTGACGAGAAACAGGTGCTTTTGATATTCAGGGATGTGTGTAATGCAGTTCTTGCCATGCACTGCCAGTCCCCACCTATTGCACACCGAGACTTGAAAGCAGAGAATCTTTTATTAGGTTCAGATGGCTTATGGAAGTTATGTGATTTTGGAAGCACTTCCACCAATCACAAACGTTTTGAAAAGCCAGAAGAAATGGGGATTGAGGAAGACAATATCAGGAAGTACACAACCCCTGCCTACAGGGCCCCCGAGATGTGGGATCTGTTCTTGAGAGAAGTTATTAATGAGAAGGTGGACATATGGGCTCTTGGGTGTCTCCTTTTTCGCATATGCTACTTCAAAAGTGCTTTTGATGGGGAGTCAAAGCTCCAAGTCTTAAATGGAAACTACCGCATTCCTGAATTACCAAAATACAATTCACCTGTCACGGACTTGATAAGAGACATGCTCCAAGCTAGACCAGATAACAGACCAGATATCACGCAGGTCTGGTTTCGTGTTAATGAGCAACTACCTATTAATTTACAGAAGTCATTACCTGACAGACCACCTGAATTGCCCTCATCCAACGATCATGAAGGTGTGTCAATGCCCTCAAACAGATCACCTCCAATGCCTCGTAGGAACCCACCTCCTCCACCTTCATCTGGAGAACCCAAAACTTCACCACAGCCATCCCCTGCTTCTAGGGGAGGGGGAAGTGGGGGTGCACTTGGTGCTTTCTGGTCCACTCAGCATGCGAAGGAATCACTTGTTGCTGAGGATAAGAGCAAACCCATTTTTGATGAAGAACCATCTAGCCACCATTTTTCACTGAAACATGATAGAATTCGTCCTGAAAACGATCAATTACCCAAAAATGATGGTCCTAACAAAGTGGTTAACACGCAAACTCATACTGTGAAAAGCAGTACACATGGAAAATTACCCAAGCCTGATACGGCACCCTCCAAGGATTTTGAATTAAATTTGTTTGAGGATAAAGATCGTGTAGGTGAGAGTACAACTAACTTTCAAAACCAGGCTTTTAACACTTTTGTTGCTGAATTCGATGCCACTAAGCTCAACCCTGGACTTAATAACAAACCTGAAAGGGAACAAGCATTAGAGGCTGAGGTGGAGATACTCAAAGAGAAGCTGAAGGAAGCTAATTTGGAAAAAGCTGAAATAACATCAAAGTACGAAAAGCTTTCTGCTATCTGCCGATCACAAAGGCAAGAATTGCAGGATCTCAAGCAAGCACTCGCAGCTAGGACTCCTTCACCAAGTAGAGAGGGTTTGAAAATCTCTCCCGCAGTTACATCGTCTGCATCTGCATCTGCATCTTCGGATAAGTCATGGCAAGCTTTTCCAGAGGAACCGCAACAACAAAGGTCTCTTTCAGCCGAGAATACCTCCAAATCTGTCAGGGTGAAAAATGGTCAGCAGAACAAGCAACCTGTTCCTCTAGCTACTGATTTTGATTCATGGGGTTTTGGAACAGATAGCTTCAGTGCTGTACCTGCAGGCAGCCCACAGATGCAAAGACCTAGCAGTGCAGGAACAAAGTCTCAGGCTTTTGGTGAGGCAAACAAGTCAACTTCTCAACCAGCTGGATGGGCTGGTTTTTAA 1989 0.4434 MWRFKPFSHKEQTGLEGRTIDVGNLKIHVIKAIAEGGFSCVYLARDAVHMSKQYALKHMICNDEESLGLVKKEISVMKVLAGHPNVVTLHAHAIFDMGRTKEAFLVMEFCERSLVNVLESRGAGYFDEKQVLLIFRDVCNAVLAMHCQSPPIAHRDLKAENLLLGSDGLWKLCDFGSTSTNHKRFEKPEEMGIEEDNIRKYTTPAYRAPEMWDLFLREVINEKVDIWALGCLLFRICYFKSAFDGESKLQVLNGNYRIPELPKYNSPVTDLIRDMLQARPDNRPDITQVWFRVNEQLPINLQKSLPDRPPELPSSNDHEGVSMPSNRSPPMPRRNPPPPPSSGEPKTSPQPSPASRGGGSGGALGAFWSTQHAKESLVAEDKSKPIFDEEPSSHHFSLKHDRIRPENDQLPKNDGPNKVVNTQTHTVKSSTHGKLPKPDTAPSKDFELNLFEDKDRVGESTTNFQNQAFNTFVAEFDATKLNPGLNNKPEREQALEAEVEILKEKLKEANLEKAEITSKYEKLSAICRSQRQELQDLKQALAARTPSPSREGLKISPAVTSSASASASSDKSWQAFPEEPQQQRSLSAENTSKSVRVKNGQQNKQPVPLATDFDSWGFGTDSFSAVPAGSPQMQRPSSAGTKSQAFGEANKSTSQPAGWAGF* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1257 662 SMART serkin_6 27 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1257 662 CDD STKc_GAK_like 26 298 - -
Gso8g1257 662 Pfam Protein kinase domain 28 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1257 662 MobiDBLite consensus disorder prediction 301 366 - -
Gso8g1257 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Gso8g1257 662 MobiDBLite consensus disorder prediction 414 433 - -
Gso8g1257 662 MobiDBLite consensus disorder prediction 329 347 - -
Gso8g1257 662 Coils Coil 492 540 - -
Gso8g1257 662 MobiDBLite consensus disorder prediction 383 411 - -
Gso8g1257 662 MobiDBLite consensus disorder prediction 383 447 - -
Gso8g1257 662 PANTHER NUMB-ASSOCIATED KINASE, ISOFORM A 562 655 - -
Gso8g1257 662 PANTHER NUMB-ASSOCIATED KINASE, ISOFORM A 1 551 - -
Gso8g1257 662 ProSiteProfiles Protein kinase domain profile. 27 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1257 662 PANTHER SERINE/THREONINE PROTEIN KINASE 1 551 - -
Gso8g1257 662 PANTHER SERINE/THREONINE PROTEIN KINASE 562 655 - -
Gso8g1257 662 MobiDBLite consensus disorder prediction 538 662 - -
Gso8g1257 662 MobiDBLite consensus disorder prediction 554 609 - -
Gso8g1257 662 MobiDBLite consensus disorder prediction 625 662 - -
Gso8g1257 662 SUPERFAMILY Protein kinase-like (PK-like) 27 344 IPR011009 -
Gso8g1257 662 Gene3D Transferase(Phosphotransferase) domain 1 10 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1257 Gso-Chr8 11616428 11620917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1257 26 292 Miscellaneous Gene Families AT2G34180 29.749 4.93e-20 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Gso8g1257 Pkinase 8.6e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1257 K08853 - gmx:100808507 1246.49