Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1249 ATGGCAGAGTCTCAGAAACAACCAGCTTCTAGACCAAAGCAAAAGCTTCACTCCATGCAAGAGCCCAAGGCGATGAGAAAACTGCACATCATTTGCAACGATCCTGATGCTACTGATTCATCCGAAGATGAGTTGGAGAGGATTCAGAACCCGAGAAGAGTAAAAAGAAGTGCATGTGAGATCCCTCTTCCTCACACATTCACCACTCCTGAAATGAGGGTTAGCACTAAAGATCAACCCCAAAGTAAGAAGAGGGCTTTGACTCATACCCCATCAGCGAGGAGGAACACTTCTAGGAAATATAGAGGTGTTAGGCAGAGAAAATGGGGAAAATGGGCCGCTGAGATATATAACCCATTTCAGAGTACTCGTATATGGATAGGCACTTTCAGCACTGCAGAAGAGGCTTCCCAAGCCTATGAGGCCAGAAGGCTTGAGTTTGAAGCTATGGCAAAGGCTCAAGCTTACAAAACTGGTTCTCGTTCTGCTGCTGAACCTTTGGCTACAACTTCTGAGAAGAGTAACTGCCGTAACTCCTCTTCTGCTGCTGCTGCAGTTGATGTGTCTGTATCTGAGAAGGTTTCTACTACTTCTGATGACTCGGACAAAAGTGTGTTGTCACACAATTCACCATTGTCTGTGCTTGAGTTGGATACCCCAGCTTCCAAATTCATTGAGATGGGTAATGTTTCAACTGACGAAGCTATTGAGGCTAACAATTTGGTCGATGAACTTGCAGAGCTAGAGATACCAGATTTGAATCTGTTGAACTTGCCGCCACCACCATCTGCTGCTGTTCCATCTGAGATTGAGCCAAACTTTGGGCTTGATTTTGATTGGCTATCGTTCGATGATTATGGACAGGGTTTTGATGATTTTGGTGGCTTGGAAGATATTCATATTTGTGGGTTTGATGACAATGAGCCTAGTGAGCTTCCTGATTTCGATTTTGGTGATTTTGGTGCTGATGAGTTTTCTGGTTGGACTGAGGATCCCCTCAATATACATTATGCCTAA 1017 0.4444 MAESQKQPASRPKQKLHSMQEPKAMRKLHIICNDPDATDSSEDELERIQNPRRVKRSACEIPLPHTFTTPEMRVSTKDQPQSKKRALTHTPSARRNTSRKYRGVRQRKWGKWAAEIYNPFQSTRIWIGTFSTAEEASQAYEARRLEFEAMAKAQAYKTGSRSAAEPLATTSEKSNCRNSSSAAAAVDVSVSEKVSTTSDDSDKSVLSHNSPLSVLELDTPASKFIEMGNVSTDEAIEANNLVDELAELEIPDLNLLNLPPPPSAAVPSEIEPNFGLDFDWLSFDDYGQGFDDFGGLEDIHICGFDDNEPSELPDFDFGDFGADEFSGWTEDPLNIHYA* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1249 338 CDD AP2 100 147 IPR001471 GO:0003700|GO:0006355
Gso8g1249 338 Gene3D AP2/ERF domain 99 157 IPR036955 GO:0003700|GO:0006355
Gso8g1249 338 MobiDBLite consensus disorder prediction 158 207 - -
Gso8g1249 338 PIRSF PTI6 267 326 IPR017392 GO:0003700
Gso8g1249 338 PIRSF PTI6 4 260 IPR017392 GO:0003700
Gso8g1249 338 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 12 337 - -
Gso8g1249 338 ProSiteProfiles AP2/ERF domain profile. 100 157 IPR001471 GO:0003700|GO:0006355
Gso8g1249 338 MobiDBLite consensus disorder prediction 16 33 - -
Gso8g1249 338 MobiDBLite consensus disorder prediction 163 207 - -
Gso8g1249 338 SUPERFAMILY DNA-binding domain 100 147 IPR016177 GO:0003677
Gso8g1249 338 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
Gso8g1249 338 PRINTS Ethylene responsive element binding protein signature 123 139 IPR001471 GO:0003700|GO:0006355
Gso8g1249 338 SMART rav1_2 100 154 IPR001471 GO:0003700|GO:0006355
Gso8g1249 338 MobiDBLite consensus disorder prediction 1 103 - -
Gso8g1249 338 Pfam AP2 domain 100 149 IPR001471 GO:0003700|GO:0006355
Gso8g1249 338 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 12 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1249 Gso-Chr8 11533984 11535000 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1249 13 335 AP2-EREBP Transcription Factor Family AT1G68550 36.686 1.74e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso8g1249 AP2 4.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1249 - - gsj:114421068 608.216