Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1246 ATGGAGCTTGGTTTGAGCTTAGGAGACTCTTCAAGGCCTTTGCTTGGTTTCATGGAAAAGCCTCGTGAAGCCACCTCCAACCAACTGGGGTTAGGCTTCAACACAACGTTATCAATTGGTCCAATCATCACTAGACAAAAAGATCATCAACAAGATGAAGATGAAGAATACCAAGATGAAGAAACAAAGCCAAATAACAACAACAACACTCACAGAACAGAAGATCCTAATGACCTTTGTTCCAAACCCAACAACAACACAGTTCTGCATCAACTTGATTTTCTCCCTCAACTTGCTCTCCCATGGCACCCTCCTTCTGAAAACGGGAGTTTATCATCCGAGTTGGGAGGTTCTTCACGGGGGCTGGACGTGAACGTGCAACCTCCAGCGGCGGAGGACGAGGCGGCGCGGTCGTCGTCTCCGAACAGCGCCGCCTCGTCGTTTCAAATGGATCTCTGCATATACAACAGCAGAGGAGGGAGCTCTAATAAGAGGGACTTTGAGGGTGAGGCCTATGATCAAAGGACTTCTTCAAGAGCTAGCGATGATGATGACAATAATGGTAGTGGTGGTAACACCAGGAAGAAACTCAGACTCTCGAAGGAACAGTCTGCGTTCCTTGAAGAGAGTTTCAAGGAGCACAACACTCTTAATCCCAAACAAAAGCTTGCTCTTGCTAAACAACTCAATCTTCAACCTCGCCAAGTAGAAGTTTGGTTCCAAAACCGAAGAGCAAGGACTAAGTTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAGAGATGTTGTGAGACACTAACGGAAGAGAATAGAAGACTTCACAAGGAGCTTCAAGAATTGAGGGCTTTGAAGACCTCAAACCCATTCTACATGCAATTACCAGCCACTACTTTGACCATGTGCCCTTCTTGTGAACGCGTGGCCACAAATTCCACATCCACTTCCTCATCAATGAGTGCCACCATCAATGCTACTAATTCAGGAGCCACGGCCTGTGTCAAAACAGGTAATAACAATAACAACAATGACTCACCCTCCAAACCCATTGGATTCCCCTTTGGCAAACCCAGGTTCCACCCATTTGTTCACAGTAGCCAACAACAACTCCATCAGCACCAATCCTCAGCATCTTGA 1134 0.463 MELGLSLGDSSRPLLGFMEKPREATSNQLGLGFNTTLSIGPIITRQKDHQQDEDEEYQDEETKPNNNNNTHRTEDPNDLCSKPNNNTVLHQLDFLPQLALPWHPPSENGSLSSELGGSSRGLDVNVQPPAAEDEAARSSSPNSAASSFQMDLCIYNSRGGSSNKRDFEGEAYDQRTSSRASDDDDNNGSGGNTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLQPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPFYMQLPATTLTMCPSCERVATNSTSTSSSMSATINATNSGATACVKTGNNNNNNDSPSKPIGFPFGKPRFHPFVHSSQQQLHQHQSSAS* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1246 377 Coils Coil 263 286 - -
Gso8g1246 377 CDD homeodomain 194 251 IPR001356 GO:0003677
Gso8g1246 377 ProSiteProfiles 'Homeobox' domain profile. 190 250 IPR001356 GO:0003677
Gso8g1246 377 PANTHER - 86 368 - -
Gso8g1246 377 MobiDBLite consensus disorder prediction 105 146 - -
Gso8g1246 377 MobiDBLite consensus disorder prediction 163 198 - -
Gso8g1246 377 SUPERFAMILY Homeodomain-like 178 251 IPR009057 -
Gso8g1246 377 SMART halz 250 293 IPR003106 GO:0006355|GO:0043565
Gso8g1246 377 MobiDBLite consensus disorder prediction 361 377 - -
Gso8g1246 377 ProSitePatterns 'Homeobox' domain signature. 225 248 IPR017970 GO:0000981|GO:0006355
Gso8g1246 377 PANTHER PROTEIN, PUTATIVE-RELATED 86 368 - -
Gso8g1246 377 MobiDBLite consensus disorder prediction 333 377 - -
Gso8g1246 377 Pfam Homeodomain 194 248 IPR001356 GO:0003677
Gso8g1246 377 Gene3D - 198 248 - -
Gso8g1246 377 SMART HOX_1 192 254 IPR001356 GO:0003677
Gso8g1246 377 MobiDBLite consensus disorder prediction 159 198 - -
Gso8g1246 377 MobiDBLite consensus disorder prediction 69 85 - -
Gso8g1246 377 MobiDBLite consensus disorder prediction 106 120 - -
Gso8g1246 377 MobiDBLite consensus disorder prediction 46 85 - -
Gso8g1246 377 CDD bZIP 243 282 - -
Gso8g1246 377 MobiDBLite consensus disorder prediction 333 347 - -
Gso8g1246 377 Pfam Homeobox associated leucine zipper 250 284 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1246 Gso-Chr8 11493339 11495851 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1246 120 306 Homeobox Transcription Factor Family AT3G60390 60.804 1.89e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso8g1246 Homeodomain 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1246 K09338 - gmx:100805312 641.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1246 8 11493339 11495851 Gso15g2219 15 50741095 50743717 GST