Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1244 ATGGATTGTTCAGCTGCAAGAAAAACACAAAAGGCTGACCGTGAAAAGTTAAGGAGGGATCGACTCAATGAACAATTCGTAGAACTGGGTAACATTTTAGACCCTGATAGGCCCAAAAATGACAAAGCAACCATTATAGGTGATACAATTCAATTGCTGAAGGACCTAACTTCTCAAGTTAGTAAACTCAAAGATGAATATGCTACGCTAAATGAAGAATCTCGTGAGTTGACTCAGGAGAAAAATGATCTCAGGGAAGAGAAGGCATCTCTTAAATCTGATATTGGCAACTTGAATAATCAGTATCAGCAGCAGCTGAGGACCATGTTTCCATGGACTGCAATGGATCATTCAGTTATGATGGCTCCACCATCATATCCATATCCAGTGCCAATGGCAGTACCTCCTGGTCCAATTCCCATGCAGCCATACCCCTTCTTTGCTAATCAACATCCTGCAGTCATCTCCAACCCCTGTTCAACTTATGTTCCTTATTTAGCCCCCAATACGATTGTTGAACAACAATCCACCCAGTACGTATCCCCTCCACTACATCCTTGTGGTCGGTCCAATGTGTCAGGAAAACAAGAGTCCAAGAGCAAGTCATCCAGGGAGAGCAAGGCTGAAAAGAATGAGGATTCTAATGATGTCACTACAGACCTCGAGTTGAAGACTCCTGGGTCTTCTGCTGATCAGGATTTATCATCCAGACAAAGAAAATCCAGCAAGTTGTCAAGGAGGGAAAGCAGTTGCACAGAAGGAAGTTCATTAGGTAGGTGTTCTTCTTCTCGCAGTGTTCAGGACAGCTCATCGAGCAGTGTGGCGGCAAGCAGAAAGGATAATGAATGA 849 0.437 MDCSAARKTQKADREKLRRDRLNEQFVELGNILDPDRPKNDKATIIGDTIQLLKDLTSQVSKLKDEYATLNEESRELTQEKNDLREEKASLKSDIGNLNNQYQQQLRTMFPWTAMDHSVMMAPPSYPYPVPMAVPPGPIPMQPYPFFANQHPAVISNPCSTYVPYLAPNTIVEQQSTQYVSPPLHPCGRSNVSGKQESKSKSSRESKAEKNEDSNDVTTDLELKTPGSSADQDLSSRQRKSSKLSRRESSCTEGSSLGRCSSSRSVQDSSSSSVAASRKDNE* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1244 282 Coils Coil 5 25 - -
Gso8g1244 282 Coils Coil 53 108 - -
Gso8g1244 282 MobiDBLite consensus disorder prediction 220 235 - -
Gso8g1244 282 MobiDBLite consensus disorder prediction 198 219 - -
Gso8g1244 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Gso8g1244 282 Gene3D - 5 89 IPR036638 GO:0046983
Gso8g1244 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 76 IPR036638 GO:0046983
Gso8g1244 282 MobiDBLite consensus disorder prediction 248 282 - -
Gso8g1244 282 PANTHER TRANSCRIPTION FACTOR BHLH121 1 280 IPR044579 GO:0003700|GO:0055072
Gso8g1244 282 SMART finulus 12 62 IPR011598 GO:0046983
Gso8g1244 282 CDD bHLH_AtILR3_like 11 85 - -
Gso8g1244 282 PANTHER TRANSCRIPTION FACTOR BHLH121 1 280 - -
Gso8g1244 282 MobiDBLite consensus disorder prediction 180 282 - -
Gso8g1244 282 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1244 Gso-Chr8 11464086 11468652 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1244 1 246 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 63.889 3.77e-98 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso8g1244 HLH 4.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1244 - - gmx:100804250 467.618