Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1235 ATGGTTAGAGACGATCTATGCATCACCGTTCCCAGCTTCTTCCGCTGCCCTATCTCCCTCGACGTCATGAAATCCCCTGTCAGCCTCTGCACCGGCGTTACCTACGACCGTTCCAGCATCCAACGCTGGCTCGACAACGGCAACAACACCTGTCCCGCCACCATGCAGGTTCTCCAAACCACTGATTTCGTTCCCAACCGAACCTTACAGAGGCTCATCCAGATCTGGTCTGACTCGGTCACTCACCGAGTCGACTCGCCCGACTCACCTACCTCCACCGAGTCCCAATCACTCCTCTCCAAGGACCACATCCTCGTCGCCATCTCCGATTTGCACACTCGCAGCGACAATCGGTTCAACTCGCTCTCGAAAATCGCTCGTTTCGCACAAGATTCCGAGGAGAACCGCGATTTTCTCGTCAGAACGGAATGCTTCGTGCCGGTGCTGGTTGGCTTCCTCGACAATGTCAATGGCGGCGTCGAATTTCTCCAACAGGTTGTTACGGCGTTGGATTTGGTTATCAGCAAAATGGAAGATCGCGAGGGGATGAAAAACTTGATACTGAAGAGGCAAGGCGAGGGAGAAAAACAGAGCGTGGATTCTCTGCTTCTGGTTCTGCAACAAGGAAGCCATGCCTCAAAAATCGCATCGGCTAGGGTTTTGAAATCAGTCGCCGTAGACGCGGAATCGAAGCTGCTGTTAGCGGAGAAGGAAGGTTTAGTATCCGAATTGCTGAATCTAATCACGCCGGAGAAAGATCCTGATCTTATTGAGAACTGTTTATCGTGTCTGGTTTCAATTTCGACGCCGAGACGGAGCAAGATGAAGCTGGTGCGTCTCGGAGCGGTGAAGGTGTTCTCGAACCTTCTTTCGGCTCCGGGCCTGAGCGTGTCGGTGAAGGAGAAGGTGCTGAAGCTGGTGGAAACGGTGTCGTCTACGAAGGAAGGGAGGTCGGAGATTTGCGAGGATTCGGCGTGCGTTTCGGCGATAGTGGACAAGGTGCTGAAAGTGTCGAGCGTGGCGACGGAACACGCCGTTACGACGCTGTGGAGTGTGTGTTATCTGTTTAGGGATCAGAAGGCGCAAGAGGCCGTTACCAAGGCTAACGGATTGACCAAGATTCTGCTTCTGATGCAGAGCAATTGCTCACCGCAAGTGCGTCAAATGTCTTCGGATTTGCTTAAGATATTTCGGGTTAATTCTAAGTCGTGTCTTTCTTCTTATGACACCAAAACCACTCATATTATGCCCTTTTGA 1257 0.5211 MVRDDLCITVPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLQTTDFVPNRTLQRLIQIWSDSVTHRVDSPDSPTSTESQSLLSKDHILVAISDLHTRSDNRFNSLSKIARFAQDSEENRDFLVRTECFVPVLVGFLDNVNGGVEFLQQVVTALDLVISKMEDREGMKNLILKRQGEGEKQSVDSLLLVLQQGSHASKIASARVLKSVAVDAESKLLLAEKEGLVSELLNLITPEKDPDLIENCLSCLVSISTPRRSKMKLVRLGAVKVFSNLLSAPGLSVSVKEKVLKLVETVSSTKEGRSEICEDSACVSAIVDKVLKVSSVATEHAVTTLWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSPQVRQMSSDLLKIFRVNSKSCLSSYDTKTTHIMPF* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1235 418 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Gso8g1235 418 SUPERFAMILY ARM repeat 114 399 IPR016024 -
Gso8g1235 418 Gene3D - 96 413 IPR011989 -
Gso8g1235 418 CDD RING-Ubox_PUB 14 56 IPR045210 -
Gso8g1235 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 86 IPR013083 -
Gso8g1235 418 SUPERFAMILY RING/U-box 6 77 - -
Gso8g1235 418 Pfam U-box domain 10 77 IPR003613 GO:0004842|GO:0016567
Gso8g1235 418 PANTHER WDSAM1 PROTEIN 4 418 IPR045185 GO:0061630
Gso8g1235 418 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 418 - -
Gso8g1235 418 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1235 Gso-Chr8 11326202 11327811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1235 1 418 U-box Gene Family AT5G64660 54.167 4.55e-147 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1235 - - gmx:100799627 794.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1613 5 39440335 39442039 Gso8g1235 8 11326202 11327811 GST
Gso8g1235 8 11326202 11327811 Gso6g1271 6 12393516 12395169 PCT
Gso6g1271 6 12393516 12395169 Gso8g1235 8 11326202 11327811 PCT