Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1230 ATGTATGCTTCAACTTCCTTTACTTCACAAATGGTCCATGACCTTCTCATGGACACAAACTCAAGAAAGTTACTCCTTCAAGATCCACTTCTTCACCAATCAATGAACTCAGCCAACTCCCCAGATGCCATGAGTTACAACACAACAGACTCATACTTCAAAGGTCGCGACTTCGATGCAAATGTTGTCATGATACTCTCGGTCCTGTTATGTGCTGTTATTTGCTCACTCGGGTTGAACTCCATCATAAAGTGTGTCCTAAGATGTTCAAACATAGTCATCAATAACAATGACCCTTCTTCTTCAAGTGTGAGCTACAACAACCCTTCACCGAGATTGGCCAACACAGGAATCAAGAAGAAAGCCCTCAAGACTTTTCCTACTGTGAGCTACTCAACAGAGATGAAACTTCCCGGTTTGGACACAGAGTGTGTGATTTGCCTCTCGGAGTTTGCCAATGGTGATAAAGTGCGCATTTTGCCAAAGTGCAACCATGGTTTCCACGTTCGCTGCATTGACAAGTGGCTAAGTTCACACTCATCATGCCCCAAGTGCAGACAGTGCCTCATTGAGACATGTAAGAAAATTGTTGGATCCCAAATACAACCAGTGCCACCTGTGCCAGAAAGTACCATTATAAGGATCCAACCACTAGAACCTGAAGGTCTGGAGCGTAACTATAGAGAAGTATGTTAG 696 0.4382 MYASTSFTSQMVHDLLMDTNSRKLLLQDPLLHQSMNSANSPDAMSYNTTDSYFKGRDFDANVVMILSVLLCAVICSLGLNSIIKCVLRCSNIVINNNDPSSSSVSYNNPSPRLANTGIKKKALKTFPTVSYSTEMKLPGLDTECVICLSEFANGDKVRILPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIETCKKIVGSQIQPVPPVPESTIIRIQPLEPEGLERNYREVC* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1230 231 SUPERFAMILY RING/U-box 122 191 - -
Gso8g1230 231 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
Gso8g1230 231 Pfam Ring finger domain 143 186 IPR001841 -
Gso8g1230 231 PANTHER RING-H2 FINGER PROTEIN ATL78 1 231 IPR044602 GO:0016567|GO:0016740
Gso8g1230 231 SMART ring_2 144 185 IPR001841 -
Gso8g1230 231 CDD RING-H2_PA-TM-RING 143 186 - -
Gso8g1230 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 190 IPR013083 -
Gso8g1230 231 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1230 Gso-Chr8 11255954 11256909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1230 25 190 C3H Transcription Factor Family AT3G10910 46.154 7.79e-44 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1230 K19040 - gmx:100527126 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1608 5 39367774 39368881 Gso8g1230 8 11255954 11256909 GST
Gso8g1230 8 11255954 11256909 Gso4g1808 4 48309410 48310453 PCT
Gso8g1230 8 11255954 11256909 Gso6g1267 6 12357099 12358304 PCT
Gso4g1808 4 48309410 48310453 Gso8g1230 8 11255954 11256909 PCT
Gso6g1267 6 12357099 12358304 Gso8g1230 8 11255954 11256909 PCT