Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso8g1229 | ATGGCAGATGCCGAGGATATTCAACCCCTTGTTTGCGACAATGGAACTGGAATGGTCAAGGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATGCCTATGTTGGTGATGAAGCCCAATCCAAAAGAGGTATTCTTACTCTCAAGTATCCCATTGAGCATGGTATAGTCAGCAACTGGGATGACATGGAAAAGATCTGGCATCACACATTTTATAATGAACTTCGTGTTGCTCCCGAGGAGCACCCAGTGCTTCTCACTGAGGCCCCCCTCAACCCAAAGGCCAACAGAGAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCAAGTGGTCGCACAACTGGTATTGTATTGGACTCTGGTGATGGTGTGAGTCACACTGTACCAATCTATGAGGGGTATGCACTCCCCCATGCCATCCTTCGTTTGGATCTCGCTGGTCGTGATCTAACTGATCATTTGATGAAGATCCTCACTGAGAGAGGATACATGTTCACCACCTCTGCTGAGCGAGAAATTGTCCGTGACATGAAGGAAAAACTTGCATATGTTGCCCTAGATTATGAGCAAGAACTCGAGACTGCAAAAAGCAGTTCATCAGTTGAGAAAAGCTATGAGCTTCCTGATGGACAAGTTATCACAATTGGGGCAGAGAGATTCCGTTGCCCAGAAGTTCTTTTCCAGCCATCTATGATTGGAATGGAAGCTGCTGGAATTCATGAGACCACCTACAATTCTATCATGAAGTGTGATGTGGATATCAGAAAGGATCTATATGGCAACATTGTTCTTAGTGGTGGCTCAACTATGTTTCCTGGTATTGCAGACCGTATGAGCAAGGAGATCACTGCTCTTGCTCCTAGCAGCATGAAGATTAAGGTTGTAGCTCCACCAGAAAGAAAATATAGTGTCTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGATGTGGATTTCTAAAGGTGAATATGATGAGTCTGGCCCATCCATTGTCCACAGGAAGTGCTTCTAA | 1134 | 0.4621 | MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYMFTTSAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF* | 378 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso8g1229 | 377 | SUPERFAMILY | Actin-like ATPase domain | 6 | 155 | IPR043129 | - | |
| Gso8g1229 | 377 | Gene3D | Actin; Chain A, domain 4 | 182 | 273 | - | - | |
| Gso8g1229 | 377 | Gene3D | - | 140 | 340 | - | - | |
| Gso8g1229 | 377 | Gene3D | - | 10 | 371 | - | - | |
| Gso8g1229 | 377 | PANTHER | ACTIN | 1 | 376 | IPR004000 | - | |
| Gso8g1229 | 377 | Pfam | Actin | 5 | 377 | IPR004000 | - | |
| Gso8g1229 | 377 | ProSitePatterns | Actins signature 1. | 55 | 65 | IPR004001 | - | |
| Gso8g1229 | 377 | PANTHER | ACTIN | 1 | 376 | - | - | |
| Gso8g1229 | 377 | ProSitePatterns | Actins and actin-related proteins signature. | 106 | 118 | IPR020902 | - | |
| Gso8g1229 | 377 | ProSitePatterns | Actins signature 2. | 358 | 366 | IPR004001 | - | |
| Gso8g1229 | 377 | CDD | NBD_sugar-kinase_HSP70_actin | 10 | 183 | - | - | |
| Gso8g1229 | 377 | SUPERFAMILY | Actin-like ATPase domain | 149 | 377 | IPR043129 | - | |
| Gso8g1229 | 377 | PRINTS | Actin signature | 28 | 37 | IPR004000 | - | |
| Gso8g1229 | 377 | PRINTS | Actin signature | 51 | 62 | IPR004000 | - | |
| Gso8g1229 | 377 | PRINTS | Actin signature | 63 | 85 | IPR004000 | - | |
| Gso8g1229 | 377 | PRINTS | Actin signature | 117 | 130 | IPR004000 | - | |
| Gso8g1229 | 377 | PRINTS | Actin signature | 142 | 161 | IPR004000 | - | |
| Gso8g1229 | 377 | PRINTS | Actin signature | 238 | 254 | IPR004000 | - | |
| Gso8g1229 | 377 | SMART | actin_3 | 7 | 377 | IPR004000 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso8g1229 | Gso-Chr8 | 11245380 | 11248487 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso8g1229 | 1 | 377 | Cytoskeleton Gene Families | AT5G09810 | 97.878 | 0.0 | 769 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso8g1229 | K10355 | - | gmx:100777460 | 758.829 |