Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1224 ATGGATTCGGAGGATTTCCGATCCATTCTGGAGAGCGCGGGCGTGGACGTTTGGGCCCTCATGGACGCGGCCATCGCGGTGGCCTCCGCCGACCACGCTCACGAGTTGAAGCGCCGGAGAGATGGAATCGTTGAGCGCCTTTACGCGGCCAGTTCACCGCCGCCGCTGTGTCGGAACTGCGACGCCGGCGACGGGGGAGAAATCAGGACGCAGAGCAGTCCCTCCGCGGAGGAGGAAAAGGATCCCTACGGAGGCTTGTTCGACGACGAGCAACGGAAGATTCTAGACATTAAAGAGCAACTCGAAGACCCTCACCAGTCCGAAGATTCGTTGGTGGAGTTGTTGCAGAATCTAGCAGACATGGATATTACATTTCAAGCGTTAGAAGAGACTGACATTGGGAGGCACGTGAATCGGTTGCGGAAGCATTCGTCTAATGATGTTAAGAGATTGGTCAAGTTACTCGTCAGGAAGTGGAAGGAAATTGTAGATGAATGGGTGAAGTTGAAGGCCCCGGGAGAACCGGGTACTGCTGTCATGGCTGATGAGGACTCGCCTCAGCAGAGAATCCTACAAAATGGGCATCGTCAGATTCCTGATTTTGCATACTCACCAAATCCACACTATGGGAGTTTTGGGTCAGAGCGCAACAATATTGAAGCAGAACGAAAACCAAAAGCAATTCCTCGCAAAGAAGCTCCTTCAAAACCATCGCCATCAGTCACTACTCCTGCTCCTCCTACTCAAAACAGACAGAGAGAAAGCAATTTTGACCCGGATAGATTTGCTTCAGCCAGAAAACGGCTTCAAGAGAACTACAAAGATGCTGCAAATGCCAAAAAGCAAAGAACGATTCAAGTGATGGATCTCCATGAGTTACCAAAACCCAAGAATGCCTTCCTTGGAAAAAACAAAGGCGGCACTGGTCAGGGAAGGCACTGGTGA 945 0.5111 MDSEDFRSILESAGVDVWALMDAAIAVASADHAHELKRRRDGIVERLYAASSPPPLCRNCDAGDGGEIRTQSSPSAEEEKDPYGGLFDDEQRKILDIKEQLEDPHQSEDSLVELLQNLADMDITFQALEETDIGRHVNRLRKHSSNDVKRLVKLLVRKWKEIVDEWVKLKAPGEPGTAVMADEDSPQQRILQNGHRQIPDFAYSPNPHYGSFGSERNNIEAERKPKAIPRKEAPSKPSPSVTTPAPPTQNRQRESNFDPDRFASARKRLQENYKDAANAKKQRTIQVMDLHELPKPKNAFLGKNKGGTGQGRHW* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1224 314 MobiDBLite consensus disorder prediction 254 278 - -
Gso8g1224 314 ProSiteProfiles TFIIS N-terminal domain profile. 89 166 IPR017923 -
Gso8g1224 314 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 314 - -
Gso8g1224 314 SMART TFS2_5 94 165 IPR003617 GO:0005634
Gso8g1224 314 MobiDBLite consensus disorder prediction 55 85 - -
Gso8g1224 314 Pfam TFIIS helical bundle-like domain 114 163 IPR017923 -
Gso8g1224 314 Coils Coil 111 131 - -
Gso8g1224 314 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 92 173 IPR035441 -
Gso8g1224 314 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 314 IPR044790 -
Gso8g1224 314 MobiDBLite consensus disorder prediction 198 314 - -
Gso8g1224 314 CDD TFIIS_I 94 164 - -
Gso8g1224 314 MobiDBLite consensus disorder prediction 217 231 - -
Gso8g1224 314 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 88 174 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1224 Gso-Chr8 11206050 11208824 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gso8g1224 Med26 6.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1224 - - gmx:100796457 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1599 5 39298695 39301516 Gso8g1224 8 11206050 11208824 GST
Gso8g1224 8 11206050 11208824 Gso4g1815 4 48385895 48389105 PCT
Gso8g1224 8 11206050 11208824 Gso6g1259 6 12272574 12275281 PCT
Gso4g1815 4 48385895 48389105 Gso8g1224 8 11206050 11208824 PCT
Gso6g1259 6 12272574 12275281 Gso8g1224 8 11206050 11208824 PCT