Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1220 ATGGACTTCGACGAGTACGAATACCTGGAGAAGACAGTGGAGGAAGACATAGATTCCTCCAAGAAGAAGAAGGACGTCACCGACAAGAGCGAGAGGAGTTACCGAAAGCCCCGCGACGTCGACGACGATCTCGACGCCGATGACAGAAAGAGCAAGAGGTCTAGGGTCGACGACGAGAACGGCGGTTCCAAGAGAGATCGCGACAGAGACAGAGAGAGAGACCGTGACCGCGAACGTTCCTCTGGTCGTCACAGGAGCGAGAGGGAGAGAGACGGAGAGAGGAAAGACAGGGATAAGGATAGAGAGAGGAGGGATAAGGATAAGGATAAGGATAGGAGAGACCGTGATAGGGACAGGGATAGGGATAGGGATAGGGAAAAGGAGCGCGAGAGAAGAGAGAAGGATAGGGAGCGAGAGAGGGAAAGAGCGGAGAGGGAGAGATCCACAAGGAGCAGGAGTCGCTCCGAGAGGGACAGAGACAGGGAGCGAGATTTTGATATGCGCGATGGCCGGAGATTTAGGGATAAAAAAGAGGCTGCAGAACCTGAGGCAGACCCAGAAAGGGATCAGAGAACTGTGTTTGCCTACCAGATGCCGCTAAAAGCAACAGAGAGAGATGTGTATGAGTTCTTTTCAAAAGCTGGCAAGGTGAGAGATGTCCGTCTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCGATGTCAGTGCCAATGGCTATTGCTCTCTCTGGCCAACTTCTTCTTGGACAACCTGTAATGGTGAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAATCTAATGCTTCTGGTGGAGCAGCCGGTGTAACTGGCCCCTATGGAGCTGTGGACCGAAAATTGTATGTGGGGAATCTTCACTTCAACATGACTGAGAGTCAGCTTCGGGAGATTTTTGAGCCATTTGGTCCGGTTGAGATTGTGCAACTGCCTCTTGACTTGGAAACAGGACACTGCAAGGGTTTTGGGTTTGTTCAATTTACTCATCTAGAACATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTAGAGATTGCTGGCAGAACTATCAAGGTTTCATGTGTCACAGATCATGTTGCAAGCCAAGATACAACCGCAAAATCTGCAGACTTGGATGACGATGAAGGTGGATTGACTTTAAATGCTCACTCAAGAGCATTGCTTATGCAGAGGCTGGCTGGTGCTGACCCTGCAAGCCTAGGTTTGCCTGTTGTGAATGGCTCAGTTCCTGCTCAGCAGACTATTAGCTTGCCTATTGGCGCACCAGTTCTACCAACGCAAGTTATGCCTAATCCAGCAGTAGAACCTGTAGGAAACCCCAGCGACTGTTTACTTTTAAAGAATATGTTCGACCCGAGCACTGAGACGGAACCTGATTTTGATATAGACATTAAAGAGGATGTAGAGGAAGAGTGTTCTAAATATGGCCGGGTGAAGCATATTTTTGTTGACAAAAAAAGTTCAGGTTTTGTGTATTTGCGGTTTGATACAGTGGAAGCGGCAAGTGGTGCTCAACGTGCAATGCACATGAGATGGTTTGCACGCAGGTTAATTTCAGCTGTCTTCATGCAACCAGAGTTGTATGAAGCCAAGTTTAAAGGGGAAGTTTGA 1653 0.4791 MDFDEYEYLEKTVEEDIDSSKKKKDVTDKSERSYRKPRDVDDDLDADDRKSKRSRVDDENGGSKRDRDRDRERDRDRERSSGRHRSERERDGERKDRDKDRERRDKDKDKDRRDRDRDRDRDRDREKERERREKDRERERERAERERSTRSRSRSERDRDRERDFDMRDGRRFRDKKEAAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASGGAAGVTGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEIVQLPLDLETGHCKGFGFVQFTHLEHAKAAQSLNGKLEIAGRTIKVSCVTDHVASQDTTAKSADLDDDEGGLTLNAHSRALLMQRLAGADPASLGLPVVNGSVPAQQTISLPIGAPVLPTQVMPNPAVEPVGNPSDCLLLKNMFDPSTETEPDFDIDIKEDVEEECSKYGRVKHIFVDKKSSGFVYLRFDTVEAASGAQRAMHMRWFARRLISAVFMQPELYEAKFKGEV* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1220 550 CDD RRM3_RBM39_like 455 537 - -
Gso8g1220 550 Gene3D - 452 549 IPR012677 -
Gso8g1220 550 MobiDBLite consensus disorder prediction 1 190 - -
Gso8g1220 550 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 550 - -
Gso8g1220 550 SUPERFAMILY RNA-binding domain, RBD 293 539 IPR035979 GO:0003676
Gso8g1220 550 TIGRFAM SF-CC1: splicing factor, CC1-like family 87 546 IPR006509 GO:0003723|GO:0005634|GO:0006397
Gso8g1220 550 CDD RRM2_RBM23_RBM39 295 367 - -
Gso8g1220 550 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 386 474 IPR029123 -
Gso8g1220 550 Coils Coil 124 147 - -
Gso8g1220 550 MobiDBLite consensus disorder prediction 13 190 - -
Gso8g1220 550 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Gso8g1220 550 CDD RRM1_RBM39_like 192 264 - -
Gso8g1220 550 Gene3D - 289 385 IPR012677 -
Gso8g1220 550 SUPERFAMILY RNA-binding domain, RBD 184 278 IPR035979 GO:0003676
Gso8g1220 550 PANTHER CC1-LIKE SPLICING FACTOR 1 550 - -
Gso8g1220 550 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 371 IPR000504 GO:0003723
Gso8g1220 550 Gene3D - 184 278 IPR012677 -
Gso8g1220 550 SMART rrm1_1 457 534 IPR000504 GO:0003723
Gso8g1220 550 SMART rrm1_1 192 264 IPR000504 GO:0003723
Gso8g1220 550 SMART rrm1_1 294 367 IPR000504 GO:0003723
Gso8g1220 550 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 479 532 IPR000504 GO:0003723
Gso8g1220 550 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 365 IPR000504 GO:0003723
Gso8g1220 550 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 260 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1220 Gso-Chr8 11152317 11159954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1220 265 366 Eukaryotic Initiation Factors Gene Family AT4G34110 35.922 5.18e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1220 K13091 - gmx:100793461 762.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1595 5 39241147 39249194 Gso8g1220 8 11152317 11159954 GST
Gso8g1220 8 11152317 11159954 Gso6g1254 6 12223637 12230938 PCT
Gso6g1254 6 12223637 12230938 Gso8g1220 8 11152317 11159954 PCT