Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1219 ATGATGAAGAACGATAGAGAAAAGGGTAACGAGGTTGACCAGAGTTACATACAGCAGCACCACTCGTTGTCAATGCCAATGATGTTTTCGGGTTTTAACAGAGAGAAGGAGATGTCAGCCATGATCACTGCTTTGACACGTGTGGTTTGTGGAGATTATTCTCTTGTTCATCACAATATTGATAATACTAATAGTGCAATTGTTGTTGGTGGTGGTGGTGGTGATGATGTTTCAAATATGGCTTCTGGTTCTATGCCACCTTCGTCTACTTCTTTATCTCATGGTGGCAACTCTGTTCTCAAGAGAAGAAGGGAAGATGATAATACAAGTGATTTCTTACGTGGAGGTTCATTCCCTGCTATTTTAACAACTGCGGAAGGTTCAAGCACGATAAGAAGAAGAAGAGCGAATACGGTATACGATTACGAATACAGAAGAGAGAAGGTGAAAGTGGAGGAGGAAGAAGAAGCGAGGAGGAAATACAGAGGAGTGAGACAGAGGCCGTGGGGGAAATGGGCTGCGGAAATAAGAGACCCTTTGAAAGCCAGAAGGGTGTGGTTAGGAACATTTGAAACCGCTGAGGACGCAGCCAGAGCGTACGATCAAGCTTCCTTGCGTTTCAGAGGCAACAAAGCCAAACTCAACTTCCCTGAAAACGTTAGGCTCAGACACACTGAGACTCTTCAGGGTTCACGTGCTTCAAGCAATTTTTATGACAACTCTTATTCGCATGTTCATGATTTACCCGTGAGCCTCTACGATCAGACTACCATGGCTTCTTCATCAACTATATCTATGACTTCTCCCCAGGCACCACCTTCGATTTATCCTACGCATCTACTACCGGCATGGTCTTCTGGTTATGCTTATAATAGCTCCTCTTCTTCTGCCTGA 894 0.4441 MMKNDREKGNEVDQSYIQQHHSLSMPMMFSGFNREKEMSAMITALTRVVCGDYSLVHHNIDNTNSAIVVGGGGGDDVSNMASGSMPPSSTSLSHGGNSVLKRRREDDNTSDFLRGGSFPAILTTAEGSSTIRRRRANTVYDYEYRREKVKVEEEEEARRKYRGVRQRPWGKWAAEIRDPLKARRVWLGTFETAEDAARAYDQASLRFRGNKAKLNFPENVRLRHTETLQGSRASSNFYDNSYSHVHDLPVSLYDQTTMASSSTISMTSPQAPPSIYPTHLLPAWSSGYAYNSSSSSA* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1219 297 PRINTS Ethylene responsive element binding protein signature 161 172 IPR001471 GO:0003700|GO:0006355
Gso8g1219 297 PRINTS Ethylene responsive element binding protein signature 183 199 IPR001471 GO:0003700|GO:0006355
Gso8g1219 297 Pfam AP2 domain 160 209 IPR001471 GO:0003700|GO:0006355
Gso8g1219 297 SMART rav1_2 160 223 IPR001471 GO:0003700|GO:0006355
Gso8g1219 297 Gene3D AP2/ERF domain 159 219 IPR036955 GO:0003700|GO:0006355
Gso8g1219 297 ProSiteProfiles AP2/ERF domain profile. 160 217 IPR001471 GO:0003700|GO:0006355
Gso8g1219 297 PANTHER DNA-BINDING DOMAIN PROTEIN 1 291 - -
Gso8g1219 297 CDD AP2 161 219 IPR001471 GO:0003700|GO:0006355
Gso8g1219 297 PANTHER DNA-BINDING DOMAIN 1 291 IPR044808 GO:0003700|GO:0009873
Gso8g1219 297 SUPERFAMILY DNA-binding domain 160 218 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1219 Gso-Chr8 11142885 11144681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1219 138 222 AP2-EREBP Transcription Factor Family AT5G61890 63.636 9.76e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso8g1219 AP2 3.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1219 - - gsj:114423842 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1593 5 39224633 39226700 Gso8g1219 8 11142885 11144681 GST