Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1197 ATGGCGCCGAAGATAACACGCAAGGTCAGCAGAAACCCCGAATTGATAAGGGGAATCGGAAAGTACTCGAGGTCGCAGATGTACCACAAGAGGGGCATTTGGGCTATCAAGGCCAAAAACGGTGGCGTTTTACCTCGCCACGACCCCAAACCCAAACCTGAAACTCCCACTGAAAAACCACCCAAATTTTACCCCGCTGATGATGTCAAGAAACCCCTTGTCAACAAGCACAAACCCAAACCAGCTAAGCTCAGGGCTAGCATTACCCCCGGAACAGTGTTGATTCTTCTTGCTGGTAGATTTAAGGGAAAGAGGGTAGTGTTTTTGAAGCAGCTACCTTCTGGGTTGCTTCTTGTAACAGGTCCTTTCAAGGTTAATGGAGTTCCTTTGAGACGTGTGAATCAGGCCTATGTTATTGGCACATCAACCAAAGTAGATGTCTCTGCTGTTAATGTCAACAACTTTGATGACAAATACTTTGCGAAGGAAGCCCAGAGGAAGAAGAAGAAGGGAGAAGGGGAGTTCTTTGAGGCAGAGAAGGAGGAAAAGAGCGTGTTACCCCAGCAGAAGAAAGATGACCAGAAAACAGTGGATGCTGCATTGTTAAAAGCCATTGAGAGTGTGCCAGACTTGAAGTCTTATTTGGGTGCCAGGTTTTCTCTAAAGGCTGGCGTGAAACCTCATGAGCTAGTCTTCTAG 699 0.4692 MAPKITRKVSRNPELIRGIGKYSRSQMYHKRGIWAIKAKNGGVLPRHDPKPKPETPTEKPPKFYPADDVKKPLVNKHKPKPAKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKVNGVPLRRVNQAYVIGTSTKVDVSAVNVNNFDDKYFAKEAQRKKKKGEGEFFEAEKEEKSVLPQQKKDDQKTVDAALLKAIESVPDLKSYLGARFSLKAGVKPHELVF* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1197 232 PANTHER 60S RIBOSOMAL PROTEIN L6 1 232 - -
Gso8g1197 232 Pfam Ribosomal protein L6e 125 232 IPR000915 GO:0003735|GO:0005840|GO:0006412
Gso8g1197 232 Pfam Ribosomal protein L6, N-terminal domain 7 60 IPR005568 GO:0003735|GO:0005840|GO:0006412
Gso8g1197 232 MobiDBLite consensus disorder prediction 43 75 - -
Gso8g1197 232 Coils Coil 161 181 - -
Gso8g1197 232 MobiDBLite consensus disorder prediction 39 82 - -
Gso8g1197 232 CDD KOW_RPL6 80 232 IPR041997 -
Gso8g1197 232 Gene3D - 86 170 IPR014722 -
Gso8g1197 232 PANTHER 60S RIBOSOMAL PROTEIN L6 1 232 IPR000915 GO:0003735|GO:0005840|GO:0006412
Gso8g1197 232 SUPERFAMILY Translation proteins SH3-like domain 86 172 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1197 Gso-Chr8 10914169 10916157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1197 6 232 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 81.057 1.11e-120 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1197 K02934 - gmx:100785356 431.024