Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1190 ATGACAGGGACGAAGAGAAACCAAATTACAACAAGTCCTGTGGGAAGTCCAACATCTGGTAACATCTCAGACAGCTACTCTTCAAAAGAACAAGACAGATTCCTCCCAATAGCCAATGTTAGCCGAATCATGAAAAGGGCACTCCCAGCCAATGCAAAAATCTCAAAGGAAGCAAAAGAAACAGTTCAAGAGTGTGTGTCTGAGTTCATAAGCTTCATCACTGGTGAGGCCTCAGACAAGTGCCAGAGGGAAAAGAGGAAGACAATCAATGGTGATGATCTTCTTTGGGCCATGACAACACTAGGATTTGAGAACTATGTTGGACCCTTGAAGCTCTACCTCAACAACTACAGGGAAACTGAGGGAGAAAAGAGTTCTACTTCTATGGCAAAACAAGAAGAACTTCACTCTCCAACTCATCAACACCAAACCAATATTGATGGGGTGGTTGAAATCAACAAGTTATTGCCTCATTCTGTGGCTGCAGCAACCAAAGCTTCGGACTTCAACAACACTACTTTCAGTGCTGGTGGCTTCTATTCTGTGGGGCCTCATCAAGTAACTGCTCCAAAGAGCTTCACTGAGATGGGAGGGTTGAATGGTTATAGAGAGAGTTCCATTGCTCAAAGTGCGCTCAGTGCTGATCAAATTCAAGATGCAAGTGGCAATAGAATGATGCCACCCAACCTACGTTATAGGGTTGAATGGTAG 711 0.4416 MTGTKRNQITTSPVGSPTSGNISDSYSSKEQDRFLPIANVSRIMKRALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKLYLNNYRETEGEKSSTSMAKQEELHSPTHQHQTNIDGVVEINKLLPHSVAAATKASDFNNTTFSAGGFYSVGPHQVTAPKSFTEMGGLNGYRESSIAQSALSADQIQDASGNRMMPPNLRYRVEW* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1190 236 Gene3D Histone, subunit A 22 148 IPR009072 GO:0046982
Gso8g1190 236 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 16 193 - -
Gso8g1190 236 SUPERFAMILY Histone-fold 31 132 IPR009072 GO:0046982
Gso8g1190 236 PRINTS CCAAT-binding transcription factor subunit A signature 62 80 - -
Gso8g1190 236 PRINTS CCAAT-binding transcription factor subunit A signature 81 99 - -
Gso8g1190 236 PRINTS CCAAT-binding transcription factor subunit A signature 100 118 - -
Gso8g1190 236 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 34 98 IPR003958 -
Gso8g1190 236 MobiDBLite consensus disorder prediction 1 28 - -
Gso8g1190 236 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 16 193 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gso8g1190 236 ProSitePatterns NF-YB/HAP3 subunit signature. 65 81 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1190 Gso-Chr8 10868101 10869514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1190 27 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.255 8.67e-64 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gso8g1190 CBFD_NFYB_HMF 1.4e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1190 K08065 - gmx:100797721 473.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1557 5 38977102 38978524 Gso8g1190 8 10868101 10869514 GST