Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1182 ATGGATGCTACATCCTCACAGTTTGTTTCCTCAAGAAGAATGGGTGTATATGATCCTATCCACCAAATTAGCATGTGGGAAGAAACTTTCAAAAGTAATGATACTAATAATTTAACTGTATCCACATCCATAATTGGGGAGGTGGAGATGAAGTTAGATAATCAGGTTCATGTGCAATCAGAGGATGCTTCTCATGGAATATTTGGAACATCTGTGAAGTACGATCAAGATGCTAAGCTTACTGATAAGACACAAAGACGTCTTGCACAAAATCGAGAGGCCGCTCGCAAGAGTCGTTTGAGGAAAAAGGCATACGTGCAGCAGTTAGAATCATGTCGTTTGAAGCTCGTGCAGTTAGAGCAAGAGGTAGATCATGCAAAACAACAGGCAACAAAACTGCAGGGATTGTATATTGGCGACGGATTGAGTTCTAATAATTTGAGTTTTGCTGGCTCTGTAAATTCAGGAATAACGCTTTTCAAGATGGAGTATGGAAACTGGCTGGAGGAGCAAAATAGACAAATTTTAGAACTGAGAACTGCTTTAAGTTCTCATATAGGTGACATACAGCTCGGGACACTTGTACAGGGCATAATGAACCACTACACCAAACTCTTTAGCATGAAATCTGCTGCAGCAAAAGCAGATGTTTTCTATGTTATGTCTGGTATGTGGAAGACAACAGCTGAACGATTTTTCTTGTGGATTGGAGGATTTCGCCCCTCTGAACTTCTAAAGGTTCTGGTCCCTCTAAGTGAACCTTTGACAGAGCAACAACGGTTTGATGCTTATGGCCTTGAAAAATCATGCCAGCAAGCAGAAGATGCTCTTTCACAAGGTATGGAAAAACTTCAGCAAATGCTCGCTGACTCTGTAGGACCAGGACAACTAGTTGAAGGAAATCACATTCCCCAAATGGATACTGCAATGGAGAGACTAGAAGCACTTGTGAGCTTTGTGAACCAGGCTGATCATCTACGACAAGAAACATTGAGGCAAATGTATCGAATACTTACCACACGTCAGACTGGTCGATTTCTGCTTGATTTGGGTGAATATTTTCAACGCCTGCGGGCTTTGAGCAAACTTTGGGCTAATCGTCCTCAAGAACTTACTAAGTCAGTCATCAAACATTAG 1137 0.416 MDATSSQFVSSRRMGVYDPIHQISMWEETFKSNDTNNLTVSTSIIGEVEMKLDNQVHVQSEDASHGIFGTSVKYDQDAKLTDKTQRRLAQNREAARKSRLRKKAYVQQLESCRLKLVQLEQEVDHAKQQATKLQGLYIGDGLSSNNLSFAGSVNSGITLFKMEYGNWLEEQNRQILELRTALSSHIGDIQLGTLVQGIMNHYTKLFSMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLVPLSEPLTEQQRFDAYGLEKSCQQAEDALSQGMEKLQQMLADSVGPGQLVEGNHIPQMDTAMERLEALVSFVNQADHLRQETLRQMYRILTTRQTGRFLLDLGEYFQRLRALSKLWANRPQELTKSVIKH* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1182 378 Coils Coil 102 136 - -
Gso8g1182 378 Coils Coil 270 290 - -
Gso8g1182 378 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 1 372 - -
Gso8g1182 378 Gene3D - 82 138 - -
Gso8g1182 378 ProSiteProfiles DOG1 domain profile. 157 367 IPR025422 GO:0006351|GO:0043565
Gso8g1182 378 PANTHER TRANSCRIPTION FACTOR TGA9 1 372 - -
Gso8g1182 378 Pfam bZIP transcription factor 82 117 IPR004827 GO:0003700|GO:0006355
Gso8g1182 378 SUPERFAMILY Leucine zipper domain 83 134 IPR046347 GO:0003700|GO:0006355
Gso8g1182 378 SMART brlzneu 79 139 IPR004827 GO:0003700|GO:0006355
Gso8g1182 378 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 81 111 IPR004827 GO:0003700|GO:0006355
Gso8g1182 378 Pfam Seed dormancy control 175 249 IPR025422 GO:0006351|GO:0043565
Gso8g1182 378 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 86 101 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1182 Gso-Chr8 10810738 10817370 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1182 1 372 Calmodulin-binding Proteins AT5G65210 64.096 5.84e-174 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso8g1182 DOG1 2.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1182 K14431 - gmx:100780003 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1551 5 38932560 38940318 Gso8g1182 8 10810738 10817370 GST
Gso8g1182 8 10810738 10817370 Gso18g0181 18 1580131 1586039 PCT
Gso8g1182 8 10810738 10817370 Gso13g1439 13 29873797 29879602 PCT