Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1160 ATGGGAACTGCTATAGACATGTACAACAGCAGCAACATCGTAGCGGATTTCCTAGATCCGTATAGTGAAGAGCTGATGAAAGCACTTAAGCCTTTTATGAAAAGTGATTATTTCTCTGCCTCTTCTTCTTCTTCACTCGAATCACAGCCTTGTTCTTTTTCATCTAATTCTCTCCCCACTTCGTATCCCTCTTCCAACCAAATCAAGCTCAACCAACTCACCCCAGACCAAATTGTTCAGATTCAGGCCCAAATCCACATTCAGCAGCAGCAGCAGCACGTGGCCCAAACCCAAACCCACCTGGGCCCAAAACGCGTCCCCATGAAGCACGCTGGCACGGCCGCGAAACCCACGAAGCTCTACCGCGGGGTGCGGCAACGGCATTGGGGCAAGTGGGTCGCTGAAATCAGACTCCCAAAGAACCGCACGCGCCTCTGGCTAGGAACATTCGACACCGCAGAGGAAGCAGCATTAGCGTACGACAACGCAGCGTTTAAGCTCAGAGGCGAGTTCGCGCGTCTCAATTTTCCTCATCTAAGACACCACGGAGCCTTCGTTTTCGGCGAGTTCGGAGATTACAAGCCTCTACCTTCTTCCGTGGATTCCAAACTGCAAGCTATTTGCGAAAGCTTAGCGAAACAAGAGGAAAAGCCGTGTTGCTCCGTCGAAGACGTGAAGCCCGTGATACACGCTGCTGAGCTGGCAGAGGTCGAGTCTGACGTGGCAAAATCGAACGCTGAATATGTTTATCCCGAGTTCGAGGATTTTAAGGTCGAGCACGAGAACCCAATGTTTTCTGGTGAATCTTCTTCGCCTGAATCCAGTGTTACTTTCTTGGATTTCTCGGACTTCTCGGATTCTAATAATCAGTGGGATGAAATGGAGAATTTTGGGTTGGAGAAGTTCCCTTCTGTGGAGATTGATTGGGAAGCTATATGA 939 0.4963 MGTAIDMYNSSNIVADFLDPYSEELMKALKPFMKSDYFSASSSSSLESQPCSFSSNSLPTSYPSSNQIKLNQLTPDQIVQIQAQIHIQQQQQHVAQTQTHLGPKRVPMKHAGTAAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDNAAFKLRGEFARLNFPHLRHHGAFVFGEFGDYKPLPSSVDSKLQAICESLAKQEEKPCCSVEDVKPVIHAAELAEVESDVAKSNAEYVYPEFEDFKVEHENPMFSGESSSPESSVTFLDFSDFSDSNNQWDEMENFGLEKFPSVEIDWEAI* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1160 312 Pfam AP2 domain 121 170 IPR001471 GO:0003700|GO:0006355
Gso8g1160 312 ProSiteProfiles AP2/ERF domain profile. 120 177 IPR001471 GO:0003700|GO:0006355
Gso8g1160 312 CDD AP2 119 179 IPR001471 GO:0003700|GO:0006355
Gso8g1160 312 Gene3D AP2/ERF domain 120 178 IPR036955 GO:0003700|GO:0006355
Gso8g1160 312 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 59 - -
Gso8g1160 312 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 66 312 - -
Gso8g1160 312 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700|GO:0006355
Gso8g1160 312 PRINTS Ethylene responsive element binding protein signature 143 159 IPR001471 GO:0003700|GO:0006355
Gso8g1160 312 SMART rav1_2 120 183 IPR001471 GO:0003700|GO:0006355
Gso8g1160 312 SUPERFAMILY DNA-binding domain 120 178 IPR016177 GO:0003677
Gso8g1160 312 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF060-LIKE 1 59 - -
Gso8g1160 312 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF060-LIKE 66 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1160 Gso-Chr8 10639782 10641370 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1160 4 312 AP2-EREBP Transcription Factor Family AT4G39780 49.679 3.40e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso8g1160 AP2 2.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1160 K09286 - gmx:100818839 568.54