Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1156 ATGGGAAACAACTTCCCACAGGGAAAATGTGGCTGTGGTGGCTTAATATTCTGGCGTCCTCCTCCCAACAACAACAATAACAACAGCAATGCCAACAAATTTGAGAATTTATCAAACGCCTCTGACACAAAAAAAGGTCAAGGTGGCTGTGAAGATATAACTTTCTCAGGAACAGCTTCATCTAATAAACCCACAAATTCTTCAACTCGTTCTGGCACCAAGCCAAACCATGTTGTTAACCAAAACTACCAAAGGAACCATCCCAAAGTGTCACCTACCGAGGGCTATGTCAGCAATGGAAGAAGGGTCCCTAAAGAAGCAATTGGCATTTCTGGTGAACTGGAAAGCATGATCACCGATCGCCAAAAGGGGAGCAGCAACCTTGTTCGTGCTTCTTCTAGCAACGTTATGATGTTTAATAATTTAGGTAACCTCAGGCAAGGAGGGAATACAAATACGTATTCTCAGAACCCTGTTGCCAATGGAAGATACACAAACCAAACGGTGGAGAATGTAAGTAAAGGAAACAAGGAACAACCGGGTTCTCTATGCAGGGTCGTGTCTACTAGAATGAACCCCGAACAATTAAAGATAATGGGCAATGAGGATTATAAGAATGGAAGATTTCAAGAAGCATTGGCTCTTTATGATGCTGCAATTGCAATTGACCCTAATAAAGCTTCCTATAGGAGCAACAAAAGTGCAGCATTAACGGCTCTTGGGAGGCTTCTGGAGGCTGTGTTTGAGTGCAGAGAAGCCATTCAAATTGAGCCTCGTTATCAAAGAGCTCATTACCGATTGGGAAACTTGAACATGAGATTAGGAGAAATGGATAAGGCTCTTTATCATTACAAACAAGCAGGACCAGAGATTGACCCAGACGAGAATGCTAAAGTCAAAAAAATTCAGGTCCATTTGAACAAATGCACCGAGGCACGTAGGCTAGGAGATTGGAACAAGTTGATTAAGGAGACCAATAATGCTATTTCATCTGGTGCAGATTCTGCTCCACAGATATTTGCGTTGCAAGCCGAGGCATTTTTGAAGCTCCGTAGGCACCAACATGCAGAAGAAGCAATGTCAAAGGGGTCTAATTTTGATGTTGATCATTGCACCAAGTTCTTTGGACCTATTTGCCATGCAAATACATTGGTGACTCAGTCCCGGGTTCATTTGGCTGCTGGCAGATTTGAAGATGCCCTAGTTGCAATTCAGAGAGCATCTAGGCTTGATCCAAATAATAATGAGATGAAGAAGGTGATGAGGAAGGCTAGAGCTGCGGCTGCAGCTCGATCAAACGGAAACGAGCTTTTCATGGCATCAAAATTCTCTGAAGCATCTGTTGCCTATGGAGAAGGGTTAGAGCATGATCCATATAACTCGGTTTTGCTATGCAACCGAGCTGCATGTAGATCCAAATTAGGCCAATTTGAGAAGGCTGTGGAAGATTGCAATGCTTCTCTTAGCTTGCGTCCATCTTACAGCAAGGCTAGGCTGAGAAGAGCAGATTGTAATGCCAAGTTGAAAAGATGGGAAGCTTCAATACAAGACTATGAAATATTGCTTAAAGAGACACCGGAGGATGAAGAATTAACAAGGGCTTTGTTGGAGGCCAAAGAGCATCTTATACAACAGCGAGGTGAATGA 1647 0.4311 MGNNFPQGKCGCGGLIFWRPPPNNNNNNSNANKFENLSNASDTKKGQGGCEDITFSGTASSNKPTNSSTRSGTKPNHVVNQNYQRNHPKVSPTEGYVSNGRRVPKEAIGISGELESMITDRQKGSSNLVRASSSNVMMFNNLGNLRQGGNTNTYSQNPVANGRYTNQTVENVSKGNKEQPGSLCRVVSTRMNPEQLKIMGNEDYKNGRFQEALALYDAAIAIDPNKASYRSNKSAALTALGRLLEAVFECREAIQIEPRYQRAHYRLGNLNMRLGEMDKALYHYKQAGPEIDPDENAKVKKIQVHLNKCTEARRLGDWNKLIKETNNAISSGADSAPQIFALQAEAFLKLRRHQHAEEAMSKGSNFDVDHCTKFFGPICHANTLVTQSRVHLAAGRFEDALVAIQRASRLDPNNNEMKKVMRKARAAAAARSNGNELFMASKFSEASVAYGEGLEHDPYNSVLLCNRAACRSKLGQFEKAVEDCNASLSLRPSYSKARLRRADCNAKLKRWEASIQDYEILLKETPEDEELTRALLEAKEHLIQQRGE* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1156 548 SUPERFAMILY TPR-like 192 416 IPR011990 GO:0005515
Gso8g1156 548 Pfam Tetratricopeptide repeat 463 494 IPR001440 GO:0005515
Gso8g1156 548 ProSiteProfiles TPR repeat profile. 193 226 IPR019734 GO:0005515
Gso8g1156 548 Pfam Tetratricopeptide repeat 200 249 - -
Gso8g1156 548 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 17 546 IPR044534 -
Gso8g1156 548 Gene3D Tetratricopeptide repeat domain 192 547 IPR011990 GO:0005515
Gso8g1156 548 SMART tpr_5 193 226 IPR019734 GO:0005515
Gso8g1156 548 SMART tpr_5 381 414 IPR019734 GO:0005515
Gso8g1156 548 SMART tpr_5 461 494 IPR019734 GO:0005515
Gso8g1156 548 SMART tpr_5 261 295 IPR019734 GO:0005515
Gso8g1156 548 SMART tpr_5 427 460 IPR019734 GO:0005515
Gso8g1156 548 SMART tpr_5 495 528 IPR019734 GO:0005515
Gso8g1156 548 SMART tpr_5 337 370 IPR019734 GO:0005515
Gso8g1156 548 SMART tpr_5 227 260 IPR019734 GO:0005515
Gso8g1156 548 MobiDBLite consensus disorder prediction 53 93 - -
Gso8g1156 548 SUPERFAMILY TPR-like 429 539 IPR011990 GO:0005515
Gso8g1156 548 MobiDBLite consensus disorder prediction 23 45 - -
Gso8g1156 548 PANTHER OS01G0616333 PROTEIN 17 546 - -
Gso8g1156 548 MobiDBLite consensus disorder prediction 23 99 - -
Gso8g1156 548 ProSiteProfiles TPR repeat profile. 381 414 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1156 Gso-Chr8 10563683 10566105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1156 194 268 U-box Gene Family AT3G07370 36.000 5.84e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1156 - - gmx:100788206 1050.04