Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1139 ATGGCTGAGGCCAGACTCTACGCTCCCCCCTCTCAATTGGATATTAAGCAAATTATTTTAGAAGCACAGCATCGATGGCTACGTCCGGCTGAAATTTGTGCAATTCTCGGTAATTATAAGAAGTTTCGAATTGCTCCAGAACCTGCACATATGCCACCAAGTGGTTCACTTTTCTTATTTGATCGGAAGGTGCTGAGACACTTCAGAAAGGATGGCCATAACTGGAGGAAGAAAAAAGATGGAAAAACAGTGAGAGAAGCTCATGAGAGACTAAAGGCTGGAAGTGTGGATGTGTTGCATTGCTACTATGCCCATGGAGAAGAAAATGAAAATTTTCAAAGACGCACATATTGGTTGCTTGAAGAGGAACTCTCTCACATTGTTCTCGTCCATTATCGACAAGTGAAGGGAACCAAGGCGAATTTTACAAGTGCTAAAGAAAATGAAGAATCTCTTCCTTATGCTCAACAAACTGATAAAATTATGCCCCAAACAGAGATGGACACTTCTTTATCATCTACTCTTCATCCACATAGTTACCAGGTTCCTTCAAAAACTGTCGATACAAGCATGAACAGTGCCCAAACATCAGAATATGAAGAAGCTGAATCTGATGATCAAGAGAAGTTACCTATTATTCCTGGGGTGAATTATATCTCACTCACTCAAGACAATAAAAACAAAGACATTCTTAATGCTGGATTGACATATGAATCCCCAAAACCCCTTGGCTTTTACTCATGGGAAGGTATCTTAGAAAATAATGCTGGAAGTCAACATGTGCACTTTCAGCCTTTGTTTCCTGGAACACAGCCTGATAACATGGGAATCAATAGCAATTTTTCTCAAGGAGAAGAGATAATGGTGCCATATTTGACCACCAGCATTGCTAAGCAGCATGAGAATGGAAGTATCATTAAAGCTGAAGGAAATTGGCAGGTTTATGATGTTGATTCTTTACGCATGTCCAGTTGGCCTATAGATAGTGCTTATTCAGGCTCAACATGTGAGGTAAGTTGTAGCAACCGTGAGCAGGAAGTTAATGATGTTGATTTTCAGAAATCCTTGGAACAGTGTCTTCTACATTCACACAAACAAAACAAGGTTCTCATGCAAAATGATCTTCAAGAAAAACTTTTGAATGAAAAAGAAAAGATAAAATCAAATCTAGAGGCCTATGGAATAGAAGACACATATTTATCTTTTAAAAGGACTCTGTTAGATGGACCTCCAGCTGAAGAGGGTCTGAAGAAGCTTGACAGTTTCAACCAATGGATGAGTAAAGAGCTTGGAGATGTGGAAGAATCAAATAAACCATCCACTTCTGGTGGTTATTGGGATACAGTTGAAACTGAAAATGAGGTTGGCAACACAACTATTCCTTCCCAAGGGCACCTGGACACCTATGTATTGGATCCATCTGTTTCCCATGATCAGCTTTTTAGCATTATTGACTATTCCCCAAGCTGGGCATTTGAAGGGTCAGAAATTAAGGTTATCATTTCTGGAGAATTCCTAAGAAGTCAACATGAAGCAGAACAATGTAAGTGGTCATGCATGTTTGGTGAGGTAGAAGTGCCAGCAGTGATCATTGCAAAAGGTGTTCTTTGTTGTCATACACCTCCACACAAGGCTGGGAGGGTACCTTTCTATGTAACTTGTTCCAATAGGTTAGCATGTAGTGAAGTGAGAGAATTTGATTTCCAAGTCCACTATACTCCAGAAGACACTACAGGTGAGAATAGAGGAAGCACTTTTGATACTTTTAGTATCCGATTTGGAGAACTTTTGTCCCTGGGGCATGCCTTTCCTCAGAATTCAGATTCAATTAGTGTAAGTGAGAAATCTCAACTGAGAAGTAAAATCAATTCTTTACTGAGGGAGGATGATGATGATTGGGACAAGCTACTAAAACTTACTCAAGAGAAAGATTTTTCTCCAGAAAATTTACGGGAGCAGCTGCTTCAAAATCTTCTGAAAGATAAGTTACATGCATGGCTCCTTCAGAAAATAACTGAAGAAGGGAAAGGCCCTAATGTATTAGATGAGGGTGGCCAAGGTGTGCTTCATTTTGCAGCTGCTCTTGGCTATGATTGGGCCCTAGAACCCACAATAGTTGCTGGTGTGAATGTGAACTTTCGTGATGTAAATGGATGGACTTCTCTTCATTGGGCAGCATTTTGTGGCAGGGAGCGCACAGTTGCTTTCCTCATCTCTCTCGGCGCAGCACCCGGAGCACTGACTGATCCATGTCCAGAACATCCTTCTGGTAGAACACCAGCTGACCTAGCTTCTGCAAATGGACACAAAGGAATTGCAGGGTATCTTGCTGAGTCTTCACTAAGTGCACACCTCACAACTCTCGATTTGAACAGGGACGCGGGAGAAAATTCCGGAGCAAAAGTAGTCCAAAGACTCCAAAACATTGCTCAAGTTAATGATCTTGATGGTTTATCATATGAACTGTCATTGAAAGATTCACTGGCTGCAGTGTGTAACGCCACCCAAGCCGCAGCTCGTATTCATCAAGTTTTCAGAATGCAATCATTTCAGAGAAAACAACTGAAGGAATATGATGATGACAAACTTGGATTATCTGATGAGCGTGCTCTTTCACTCATAAAAATGAATGTGAAATCACACAAGTCTGGACCACGTGACGAGCCTGTCCATGCTGCTGCAATAAGAATCCAAAACAAATTCCGCAGTTGGAAGGGAAGAAGAGAATTTTTAATGATTCGACAACGCATAGTAAAAATTCAGGCTCACGTGAGAGGTCACCAGGTCAGGAAAAGCTGTGGGAAGATAATTTGGTCCGTTGGAATCTTGGAGAAGGTTATTTTACGTTGGCGTCGAAAAGGTAGTGGCTTGCGTGGATTTAAACCGGAGGCCAATTCTGAGGGAACTATGATACAAGATGTATCTTCAACAGATGATGACTATGATGTCTTAAAAGAAGGCAGGAAGCAAACAGAGCAAAGGTTGCAGAAAGCCCTAGCTAGGGTGAAGTCAATGGTTCAATATCCAGAGGCAAGAGACCAATACCATAGGCTGTTGAATGTTGTAACTGAGATCCAAGAAAATCAGGTAAAGCATGAGAGCAGTTCTAACAATTCAGAAGAACCGAGAGAATTCGGTGACCTCAATGATCTTGAAGCATTGTTGGACGAAGATATTTTCATGCCTACAGCAACTTAA 3198 0.4121 MAEARLYAPPSQLDIKQIILEAQHRWLRPAEICAILGNYKKFRIAPEPAHMPPSGSLFLFDRKVLRHFRKDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEENENFQRRTYWLLEEELSHIVLVHYRQVKGTKANFTSAKENEESLPYAQQTDKIMPQTEMDTSLSSTLHPHSYQVPSKTVDTSMNSAQTSEYEEAESDDQEKLPIIPGVNYISLTQDNKNKDILNAGLTYESPKPLGFYSWEGILENNAGSQHVHFQPLFPGTQPDNMGINSNFSQGEEIMVPYLTTSIAKQHENGSIIKAEGNWQVYDVDSLRMSSWPIDSAYSGSTCEVSCSNREQEVNDVDFQKSLEQCLLHSHKQNKVLMQNDLQEKLLNEKEKIKSNLEAYGIEDTYLSFKRTLLDGPPAEEGLKKLDSFNQWMSKELGDVEESNKPSTSGGYWDTVETENEVGNTTIPSQGHLDTYVLDPSVSHDQLFSIIDYSPSWAFEGSEIKVIISGEFLRSQHEAEQCKWSCMFGEVEVPAVIIAKGVLCCHTPPHKAGRVPFYVTCSNRLACSEVREFDFQVHYTPEDTTGENRGSTFDTFSIRFGELLSLGHAFPQNSDSISVSEKSQLRSKINSLLREDDDDWDKLLKLTQEKDFSPENLREQLLQNLLKDKLHAWLLQKITEEGKGPNVLDEGGQGVLHFAAALGYDWALEPTIVAGVNVNFRDVNGWTSLHWAAFCGRERTVAFLISLGAAPGALTDPCPEHPSGRTPADLASANGHKGIAGYLAESSLSAHLTTLDLNRDAGENSGAKVVQRLQNIAQVNDLDGLSYELSLKDSLAAVCNATQAAARIHQVFRMQSFQRKQLKEYDDDKLGLSDERALSLIKMNVKSHKSGPRDEPVHAAAIRIQNKFRSWKGRREFLMIRQRIVKIQAHVRGHQVRKSCGKIIWSVGILEKVILRWRRKGSGLRGFKPEANSEGTMIQDVSSTDDDYDVLKEGRKQTEQRLQKALARVKSMVQYPEARDQYHRLLNVVTEIQENQVKHESSSNNSEEPREFGDLNDLEALLDEDIFMPTAT* 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1139 1065 SUPERFAMILY Ankyrin repeat 662 778 IPR036770 -
Gso8g1139 1065 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 2 1 1029 - -
Gso8g1139 1065 ProSiteProfiles Ankyrin repeat profile. 717 749 IPR002110 GO:0005515
Gso8g1139 1065 Pfam IPT/TIG domain 483 558 IPR002909 -
Gso8g1139 1065 Gene3D - 888 936 - -
Gso8g1139 1065 SUPERFAMILY E set domains 483 568 IPR014756 -
Gso8g1139 1065 SMART iq_5 912 934 IPR000048 GO:0005515
Gso8g1139 1065 SMART iq_5 889 911 IPR000048 GO:0005515
Gso8g1139 1065 Coils Coil 981 1001 - -
Gso8g1139 1065 MobiDBLite consensus disorder prediction 1034 1048 - -
Gso8g1139 1065 MobiDBLite consensus disorder prediction 181 207 - -
Gso8g1139 1065 Pfam Ankyrin repeats (3 copies) 689 785 IPR002110 GO:0005515
Gso8g1139 1065 MobiDBLite consensus disorder prediction 1028 1048 - -
Gso8g1139 1065 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Gso8g1139 1065 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Gso8g1139 1065 Gene3D Immunoglobulins 476 572 IPR013783 -
Gso8g1139 1065 Pfam IQ calmodulin-binding motif 915 932 IPR000048 GO:0005515
Gso8g1139 1065 Pfam IQ calmodulin-binding motif 891 910 IPR000048 GO:0005515
Gso8g1139 1065 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1029 - -
Gso8g1139 1065 MobiDBLite consensus disorder prediction 181 198 - -
Gso8g1139 1065 ProSiteProfiles Ankyrin repeat region circular profile. 717 742 - -
Gso8g1139 1065 ProSiteProfiles IQ motif profile. 913 937 IPR000048 GO:0005515
Gso8g1139 1065 Gene3D - 640 807 IPR036770 -
Gso8g1139 1065 SMART ANK_2a 756 785 IPR002110 GO:0005515
Gso8g1139 1065 SMART ANK_2a 717 746 IPR002110 GO:0005515
Gso8g1139 1065 Coils Coil 376 396 - -
Gso8g1139 1065 SMART CG_1_2 18 136 IPR005559 GO:0003677
Gso8g1139 1065 ProSiteProfiles IQ motif profile. 891 919 IPR000048 GO:0005515
Gso8g1139 1065 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 939 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1139 Gso-Chr8 10446205 10454074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1139 1 1047 CAMTA Transcription Factor Family AT5G64220 46.912 0.0 872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Gso8g1139 Ank_2 2.5e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1139 K21596 - gmx:100783055 2088.54