Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1128 ATGGAAGAGGAAGAGCACGAGGTGTACGGAGGAGAGATCCCTGACGAGGGAGAGATGGAAGGAGACATTGACATGTCCGCCGCCGACGATGAAGCCGCCGTCGACGATGACGCCGCCGTCAAGGAGCTCGACGAGATGAAGCGCCGATTGAAGGAAATGGAAGAGGAAGCCGCAGCGCTTCGCGAGATGCAAGCCAAGGTCGAGAAGGAGATTGGCAGCGTTCAAGATCCTGCTAATGCAGCTGCTTCTCAGGCAAACAAGGAGGAGGCAGATGCTCGGTCTGTTTTTGTTGGCAATGTTGATTATGCATGCACACCAGAAGAAGTGCAGCAACACTTTCAGTCCTGTGGTACTGTAAACAGGGTCACTATCCTGACAGACAAGTTTGGCCAGCCTAAAGGTTTTGCTTATGTGGAATTTGTTGAAGCTGAGGCTGTTCAAGAGGCTCTCCTGTTGAATGAATCTGAATTGCATGGCCGTCAATTGAAGGTTTTGCCTAAGAGGACCAATGTTCCTGGAATGAAACAATATCGTCCTAGGTGCTTTAATCCTTACATGGCGTATGGCTTCAGGAGGCCATATACTCCTTACTTGTATTCCCCTTATGGGAAGGTTCCTAGGTTTAGAAGGCCAAATCGTTACATGCCGTACTACTAG 657 0.4977 MEEEEHEVYGGEIPDEGEMEGDIDMSAADDEAAVDDDAAVKELDEMKRRLKEMEEEAAALREMQAKVEKEIGSVQDPANAAASQANKEEADARSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRCFNPYMAYGFRRPYTPYLYSPYGKVPRFRRPNRYMPYY* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1128 218 PANTHER - 1 216 - -
Gso8g1128 218 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 163 IPR000504 GO:0003723
Gso8g1128 218 MobiDBLite consensus disorder prediction 1 21 - -
Gso8g1128 218 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 169 IPR000504 GO:0003723
Gso8g1128 218 SMART rrm1_1 94 165 IPR000504 GO:0003723
Gso8g1128 218 CDD RRM_II_PABPs 94 165 - -
Gso8g1128 218 Coils Coil 36 70 - -
Gso8g1128 218 Gene3D - 20 176 IPR012677 -
Gso8g1128 218 SUPERFAMILY RNA-binding domain, RBD 83 186 IPR035979 GO:0003676
Gso8g1128 218 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 1 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1128 Gso-Chr8 10361367 10366370 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1128 90 164 Eukaryotic Initiation Factors Gene Family AT2G36660 34.211 1.47e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1128 K14396 - gmx:100809403 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1498 5 38437826 38442412 Gso8g1128 8 10361367 10366370 GST