Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1120 ATGAAGAGACTTGGCAGTTCTGATTCTCTGGGTGCTCACATGACGATTTGTCCACCAACAGACGAACACAGTCCGAGGAACAACCACGCGTATGGGAGGGAGTTTCAGTCCATGCTGGAAGGACTCGACGAAGAAGGGTGCGTGGAAGAACCAGGGCACCACTCTGAGAAGAAACGACGACTAAGCGTGGATCAGGTGAAGGCTTTGGAGAAGAACTTCGAAGTAGAGAACAAACTCGAACCTGACCGAAAGTTGAAGCTGGCACAAGAACTTGGCTTGCAACCAAGACAAGTTGCTGTTTGGTTCCAAAACCGTCGTGCCAGATGGAAGACAAAGCAATTGGAAAGAGATTACGGCGTCCTCAAAGCCAATTATGAATCACTTAAACTTAACTACGACACCCTCCAACAAGACCACGAAGCCTTACTCAAAGAGATAAAGGAATTGAAATCGAGGCTGGTGCAAGAAGAGAACAACAACAACACTGAAAGCGATGTTTCGGTGAAGGAAGAGATGCTGACCACCACGCTCTGTGAAACCGCCATTCCTGGATCGGACACGAAGGAGTTGAGTTACGAGTGTTTTAACAAGAGTGATGAGGTGGGAGGGGGTTCTTCTGTGTTCCATGTGGATTTCAAAGATGGCTCTTCTGATAGTGACTCAAGCGCGATCTTGAACGAGGAGAACAACAACCACAGCCCCAACAATAACGCGGCGATTTCGTCGTGTGGGGTTCTGCAAAGTCACGGGCTTTTGTTGTCGCCTTCTTCGTCGTCGATGAACAACTGTTTCCAGTTCCAGAAACAGTACCAGACGACGACGACGCAGTACGTAAAGATGGAGGAGCACAATTTTCTTAGCGCCGACGAGGCCTGCAATTTCTTCTCGGATGAACAAGCACCAACTCTGCAGTGGTACTGTTCAGAGGAATGGAGTTAA 939 0.4856 MKRLGSSDSLGAHMTICPPTDEHSPRNNHAYGREFQSMLEGLDEEGCVEEPGHHSEKKRRLSVDQVKALEKNFEVENKLEPDRKLKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYESLKLNYDTLQQDHEALLKEIKELKSRLVQEENNNNTESDVSVKEEMLTTTLCETAIPGSDTKELSYECFNKSDEVGGGSSVFHVDFKDGSSDSDSSAILNEENNNHSPNNNAAISSCGVLQSHGLLLSPSSSSMNNCFQFQKQYQTTTTQYVKMEEHNFLSADEACNFFSDEQAPTLQWYCSEEWS* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1120 312 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 304 IPR045224 GO:0003700
Gso8g1120 312 Coils Coil 111 166 - -
Gso8g1120 312 Gene3D - 52 119 - -
Gso8g1120 312 Pfam Homeobox associated leucine zipper 112 153 IPR003106 GO:0006355|GO:0043565
Gso8g1120 312 MobiDBLite consensus disorder prediction 1 28 - -
Gso8g1120 312 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Gso8g1120 312 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Gso8g1120 312 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Gso8g1120 312 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Gso8g1120 312 CDD homeodomain 57 113 IPR001356 GO:0003677
Gso8g1120 312 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 304 - -
Gso8g1120 312 SUPERFAMILY Homeodomain-like 40 114 IPR009057 -
Gso8g1120 312 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Gso8g1120 312 SMART HOX_1 55 116 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1120 Gso-Chr8 10272382 10274649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1120 1 312 Homeobox Transcription Factor Family AT4G40060 48.485 1.39e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso8g1120 Homeodomain 4.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1120 K09338 - gmx:100796213 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1491 5 38343554 38345839 Gso8g1120 8 10272382 10274649 GST
Gso8g1120 8 10272382 10274649 Gso18g0130 18 1099493 1102104 PCT
Gso8g1120 8 10272382 10274649 Gso13g1489 13 30395093 30397731 PCT