Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1105 ATGTTAGGAGAAGAGAGTAACAACAACAACGACCGCGCCGGCGGTCACCGGAGAACAACACATTCCCGGTCAGTTTCCTGGACCGACCGGTCTCCGGTTACCCGGAAACCGCCGCGTCCGCTTCAGCCTCTCGCCATCCACAAACGCAGCGTTTTGGAGTGGCCCAGCGCCGGCTGCGACGATCTCGGTGATTGGTCTCTTCCACCGACCCCTAGAGGGTCCACCAAAACACCAGATTCGGGTTCGGGTCAAGTTTTCCAGTTCAAGAAAGACTATTACGCGTTCTACGACAAGGAATGTTCGAGAATCGCGGAGCACGTGTACCTGGGGAGTGACACGGTGGCGAAGAGCGTCGAGCTTCTGCGGCGGCACGGGATCACGCACGTGCTCAATTGCGTCGGGTTCGTGTGCCCCGAGTATTTCAAAACCGACTTCGTCTACAAGACCCTCTGGCTGCGTGACTCACCCTCGGAGGACATCACCAGCATTCTCTACGACGTCTTCGATTACTTCGAGGATGTCCGGAACCAGGGTGGGCGCGTGTTCGTCCACTGCTGCCAGGGCGTGTCGCGCTCTACCTCGCTCGTCATCGCGTATCTCATGTGGAGGGAAGGCCAGAGCTTCGAGGACGCCTTTCACTATGTCAAGATCGCGCGTGGCGTAACGAACCCCAACATGGGCTTCGCGTGCCAGCTGTTGCAGTGTCAGAAGCGCGTGCACGCCATGCCCGCGAGTCCTAGTTCTGTTCTCAGGATGTATAGGATGGCTCCTCATTCTCCTTATGACCCTCTTCATCTTGTGCCTAAGTTGATTGATCATCCTTCCTCACGCGCTCTTGACTCGCGTGGCGCATTTGTTGTGCATGTGCCTAATGCTATATACGTGTGGATTGGGAAGGAGTGTGGGTCGGTGATGTGTTGCAATGCAAGATCAGCGGCTGCTCAGGTTGTTCGGTATGAGAGGGCAACGGAGAAGATTGTTAGTGTGTTTGAGGATGAAGAGCCTAAGGAGTTTTGGATTGCTCTTTCTACCAAGGAAGTGGTGGTGGTGGAGAATGGAGAGGTGAAGAATGTGGTGGAGAGAATTGAGATTGATGTGGGGATTCGTCCCAGGAGAGTTGAGGAGTATGATTTGGATTTTGGGATTTTTCATAAGGCGCTTGCTGGTGGGGTTGTTCCACCTTTTTCTTTGTCTAATGCTGGATCGGAAAATTGCCTTCCTGCCAGGGAAAATGGGTGGGGGAGATTGACAAGGAAGCTTGCTAGTGGTATCATGAAAGGGTTGTTCACATCCTCTAAGTGCTGTGAGTCTAGTGTGAACATCATTGAAGAGGGAAATCAACATAAGAATGTTGATCCTCCTTTGCCACCATCTTCTAACAATGTGGGTGGTTCGTGGAGTTCCTTTGAGTGTTTTGTAGATAATGGCTTAGAGAGGGGAAAGGATAGTGTTCAACAAGTCAGGGATCAGTTTGTTGTTCCTAGCGTTGGGTCATCAATGCCGCCACCATCGCCTCATAGTCGAGCAGCATCGGATTCTTTTGCTTGTTTTCTAAGTAACAGCTCCAAATTCAGTTCCAAATCTCCACCACTTTCACCCGCCAGTTCGGATTATGCAAGTTCCTTTACATTTTCGCCTTCATCGACTGATTTGTCAATCGTGTCTTCTCGGCAGTCATCGCCTTCCGGTCTGGAATCAGCTGAACCCAATCATGTGAAAGATGCATCTTCCTCAGAGAGTCGCTCTTTAGTTCAGAAAGAAGGTGAGGCATTTCTGGCTAATCACACCTTGGTAGGGGCAAAGTCCAGTTTGCCGCGCAAAGGATCTTCCCTCTCCATTGCAGAGCGCAGAGGGAGTAACCCGCCACCTCGCATGATGCTACCCCTTGGCCAGTGA 1896 0.5195 MLGEESNNNNDRAGGHRRTTHSRSVSWTDRSPVTRKPPRPLQPLAIHKRSVLEWPSAGCDDLGDWSLPPTPRGSTKTPDSGSGQVFQFKKDYYAFYDKECSRIAEHVYLGSDTVAKSVELLRRHGITHVLNCVGFVCPEYFKTDFVYKTLWLRDSPSEDITSILYDVFDYFEDVRNQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFHYVKIARGVTNPNMGFACQLLQCQKRVHAMPASPSSVLRMYRMAPHSPYDPLHLVPKLIDHPSSRALDSRGAFVVHVPNAIYVWIGKECGSVMCCNARSAAAQVVRYERATEKIVSVFEDEEPKEFWIALSTKEVVVVENGEVKNVVERIEIDVGIRPRRVEEYDLDFGIFHKALAGGVVPPFSLSNAGSENCLPARENGWGRLTRKLASGIMKGLFTSSKCCESSVNIIEEGNQHKNVDPPLPPSSNNVGGSWSSFECFVDNGLERGKDSVQQVRDQFVVPSVGSSMPPPSPHSRAASDSFACFLSNSSKFSSKSPPLSPASSDYASSFTFSPSSTDLSIVSSRQSSPSGLESAEPNHVKDASSSESRSLVQKEGEAFLANHTLVGAKSSLPRKGSSLSIAERRGSNPPPRMMLPLGQ* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1105 631 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 158 219 IPR000387 GO:0016311|GO:0016791
Gso8g1105 631 Pfam Dual specificity phosphatase, catalytic domain 107 237 IPR000340 GO:0008138|GO:0016311
Gso8g1105 631 CDD DSP 100 234 - -
Gso8g1105 631 Gene3D Severin 251 348 IPR029006 -
Gso8g1105 631 MobiDBLite consensus disorder prediction 602 631 - -
Gso8g1105 631 ProSitePatterns Tyrosine specific protein phosphatases active site. 183 193 IPR016130 GO:0016311|GO:0016791
Gso8g1105 631 MobiDBLite consensus disorder prediction 545 584 - -
Gso8g1105 631 SUPERFAMILY Actin depolymerizing proteins 245 346 - -
Gso8g1105 631 MobiDBLite consensus disorder prediction 1 44 - -
Gso8g1105 631 ProSiteProfiles Dual specificity protein phosphatase domain profile. 99 241 IPR020422 GO:0006470|GO:0008138
Gso8g1105 631 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 91 241 IPR029021 -
Gso8g1105 631 SMART dsp_5 99 238 IPR020422 GO:0006470|GO:0008138
Gso8g1105 631 MobiDBLite consensus disorder prediction 10 24 - -
Gso8g1105 631 PANTHER MKPA PROTEIN 32 590 - -
Gso8g1105 631 MobiDBLite consensus disorder prediction 545 587 - -
Gso8g1105 631 Gene3D Protein tyrosine phosphatase superfamily 79 241 IPR029021 -
Gso8g1105 631 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 32 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1105 Gso-Chr8 10148441 10151229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1105 40 135 Protein tyrosine phosphatase (PTP) family AT3G55270 47.273 4.66e-25 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1105 - - gmx:100802311 1236.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1477 5 38210660 38213360 Gso8g1105 8 10148441 10151229 GST
Gso8g1105 8 10148441 10151229 Gso18g0115 18 964772 967923 PCT
Gso8g1105 8 10148441 10151229 Gso13g1505 13 30517902 30521707 PCT