Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1078 ATGCAGAGCCAAGTTGTGTGCAATGGTTGTAGGAGCCTTCTGCTTTACCCAAGAGGAGCAACCAATGTCTGTTGTGCATTGTGCAACACAATTACCTCTGTTCCTCCACCTGGGATGGAAATGTCTCAACTTTATTGTGGAGGTTGTAGGACATTGCTAATGTACACACGTGGAGCTACAAGTGTGAGATGTTCCTGCTGTCACACTGTAAACCTTGTTCCACCAGCATCTAATCAAGTGGCTCATGTCCATTGTGGGAACTGCCGGACAACACTCATGTATCCTTATGGAGCTCCCTCAGTCAAATGTGCTCTTTGTCACTTTATTACTAATGTCAGTACAAACAATGGAAGGCTTCCAATCCCTGTTCATAGACCCAATGGGACAAACAATGCTGGAACATTACCTTCTACATCAACATCAATGCCCCAATCTCAAAGTCAAACGGTAGTGGTAGAAAATCCAATGTCTGTTGATTCAAGTGGGAAATTGGTGAGCAATGTTGTTGTTGGCGTTACAACGGATAAGAAATAA 534 0.4363 MQSQVVCNGCRSLLLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLVPPASNQVAHVHCGNCRTTLMYPYGAPSVKCALCHFITNVSTNNGRLPIPVHRPNGTNNAGTLPSTSTSMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1078 177 PANTHER PROTEIN LSD1 1 175 IPR040319 -
Gso8g1078 177 Pfam LSD1 zinc finger 7 31 IPR005735 -
Gso8g1078 177 Pfam LSD1 zinc finger 46 70 IPR005735 -
Gso8g1078 177 Pfam LSD1 zinc finger 85 109 IPR005735 -
Gso8g1078 177 MobiDBLite consensus disorder prediction 127 144 - -
Gso8g1078 177 MobiDBLite consensus disorder prediction 121 144 - -
Gso8g1078 177 PANTHER LSD1-LIKE PROTEIN 1 175 - -
Gso8g1078 177 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 82 111 IPR005735 -
Gso8g1078 177 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Gso8g1078 177 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 43 73 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1078 Gso-Chr8 9972915 9977252 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Gso8g1078 zf-LSD1 8.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1078 - - gmx:100776394 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1456 5 38056438 38060374 Gso8g1078 8 9972915 9977252 GST