Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1076 ATGTCTCTTTGGTCTGATAAGTTGAAATTGGCTGCAGAAACTCACGCCAAAGAGATATCAGCCAGATGGGATCCAGTTGACGCATGCCGGCCTATAGTCGATGAAGCACCTGTGTTTTATCCAACTATTGAGGAGTTTGAAGACACACTTGGTTACATAGCTAAGATTCGCCCCCAAGCTGAACTTTATGGCATATGTAGGATTGTCCCTCCAGCTTGCTGGGTACCACCTTGCCCTCTTAAGGAGAAAGATTTATGGGAAAATGCAAAATTTCCCACTCGTATTCAGCAAATTGACTTGCTTCAGAACAGGGAGCCCATGAGAAAGAAAATTAGGGGAAGGAAACGAAAACATAGAAAACAGTCAAAGATGGGCATGGGTAGGAGAACTGCCAAATCAGGTTCTGAAGCTAATGTTGCTTCTGAGCCTGAGGAGAAGTTTGGATTCCAATCAGGGTCAGACTTCACACTTAAAGACTTTCAGCAATATGCTAGTGTTTTTAAAGATTGCTACTTTGGATTGAATGATGCCAATGAACATGAAAAAGTTAGTGATAATAGTCACCAGCAGAGATGGAAGCCCTCTGTGGAGGAAATTGAAGGCGAATACTGGCGAATAATAGAGCAACCAACTGATGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGATCACTTGGAAGTGGTTTTCCTAAGATATCATCCTTAACTAAGAACGAGTCAGATAGATATACCTTGTCTGGTTGGAATCTGAATAACTTCCCGCGACTGTCAGGTTCTGCATTATGTTTTGAAGGAAGTGATATCTCAGGAGTTGTAGTTCCATGGCTGTATGTTGGAATGTGCTTTTCCTCATTTTGCTGGCATGTTGAGGACCATCACCTCTATTCACTTAATTATCTGCACTGGGGTGACCCAAAAGTATGGTATGGAATTCCTGGAAGCCATGCTCCAGGTCTGGAAGATGCAATGAGAAAGCACTTGCCTGATTTATTTGAAGAACAACCAAATCTACTCAATGAATTGGTGACTCAGTTATCTCCTTCAGTTCTTAAATCCGAGGGGGTGCCTGTACATCGCACTGTCCAGCATTCAGGGGAATTTGTTGTTACCTTTCCAAGGGCATACCACTGTGGCTTCAATTGTGGCTTCAACTGTGCAGAGGCTGTGAATGTGGCTCCTGTTGACTGGCTTCTGCATGGCCAGAATGCTGCCGAGCTTTACAGTTCGCAGTGCCGTAAGACTTCATTGTCTCATGACAAGTTATTATTTGGATGTGCTCAGGAAGCCGTGCATGCCCTTGCAGATTTAACTCTTCATGGAAAAGAAGATCAAAAATATATAAAATGGAGAAGCGCTTGTGGGAAAGATGGAGTTCTTACCAAAGCAGTTAAGATAAGGATAACTATGGAAAAGGAGAGGCTTGACTGTATTCCAACTCATTTAAAGATGCTGAAGATGGACAGTAAGTTTGATTTGTTTGAGGATAGAGAATGCTTTGCTTGCTTCTATGACTTGCACCTATCTGCCGTAGGTTGCAAGTGCTCTCCTGACTGTTATTCTTGTCTCAAACATTCAAATTTGTTTTGCTCATGTGAAATGAACAACAGATTTATTCTGTTTCGTTATACTATGGATGAACTAAGTACATTGGTTGAAGCATTAGAAGGAGAATCGCATGCTATTGAAGTGTGGGCAAATAGAAACACTGTAATGGTTTCTGCTGATGCTGAGGATGCTTGCATTTATAAACAAGATGTGGAGAGTGCCATTTGCCAAACCCAGAGTTACAAAGAAGGGAAAAACTCAACTTATTGTGCAGGAACTAATGATAAGTCAAATTCAACTATACCTAGCAGTTCTTACAGCCAAATTTCAGCAGAATTGGTTCACTCAGAGTTTCACCATGAAACTCTTAGTGCACCATCTGACACTAAAGATTGTCATAAAGATAGTTTGAATGAAAAAGATTTGGCCATGGACAATAAAATTATGGTGGGCACAGGAGGTTCTGTGGATTTGAATATTGATGTTATGTCTGGTGAACCTGAAAATTATTTTCTGCATGCTGCTGATTACCATCATAATAAGGGTGTTCCATATGTGGAAAAAGTCTGCTTTGCAGAGACCAGAAAAGAACAAGACAACATGGAACCTGGGGCTGATTGTATTGCTTCCTTGGAGAAAGAATTTTCATCTTGTTCAAGGGATGTTCAAAATTCTTGTACACTTGATGGCTATAAATTGTTTGGGGTGGATTTGCAGATGCATTCTGATTCAGGAGAGCAACTCAACAGTGTATCTAAAATGGGCGTTGTCGAAACCTCCAATACAAGTATATCTTTGACAAACCAAAGCTCCTTAATGAATAACTTTGGTATTTCTGTTGAGCCTGTAAATTTGGGCTCTGTTATGTGCGGAAAACTGTGGTGCAGTAAGCATGCAATATATCCAAAAGGATTCAAGAGTCGTGTTAAGTTCTTTAGCATTCTTGATCCACCAAGAATTTGTAATTATGTTTCTGAAGTCTATGGTGCTGGATTTCTTGGGCCTATTTTCAAGGTTACCATGGAAGAACGTCCAAATGAGGCTTTCACAAACACCTCAGCAGATAAGTGCTGGGAAACAGTTCTTGACAGACTAAATCATGAAATCAAGAGGCGAAGGAGTCGAGGTGAAATAGAACTTCCACCCTTGGAACTTCTGCAAAGCATTAACGGTCACAAAATGTTTGGATTCCTTTCACCATCCATTATTCAGGCCGTTGAAGCTGCAGATCCCAAACATCAATGCGTCGAGTACTGGAATCACAAAGAAGTTGTCTCTGAGTCTTCAGGCAGTGCTATTGATGACTGTAAGTTCAGTCATGGTTCAAGCAACTCCCTAGGTGATGTCAAGACCAAACTTTTTGGTGCCGGTTTGATAAAGCAGGAGCAAGATAGCATCATAGGAAATTGTGATTCTTTTGAAGAGATGAAATTGGTGCTACAAGGATTCTTGAAAAAGGCAAGTCCCAATGAATTAAGTGCCATGCATAAGTTATTCAGCTCTGATGCACTGTTCACTCAGTGGAGAACAGCATTTGTATCACTGATAGAGGAAATCCAGAAAGCTTGTGCATAA 3126 0.4104 MSLWSDKLKLAAETHAKEISARWDPVDACRPIVDEAPVFYPTIEEFEDTLGYIAKIRPQAELYGICRIVPPACWVPPCPLKEKDLWENAKFPTRIQQIDLLQNREPMRKKIRGRKRKHRKQSKMGMGRRTAKSGSEANVASEPEEKFGFQSGSDFTLKDFQQYASVFKDCYFGLNDANEHEKVSDNSHQQRWKPSVEEIEGEYWRIIEQPTDEVEVYYGADLETGSLGSGFPKISSLTKNESDRYTLSGWNLNNFPRLSGSALCFEGSDISGVVVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGIPGSHAPGLEDAMRKHLPDLFEEQPNLLNELVTQLSPSVLKSEGVPVHRTVQHSGEFVVTFPRAYHCGFNCGFNCAEAVNVAPVDWLLHGQNAAELYSSQCRKTSLSHDKLLFGCAQEAVHALADLTLHGKEDQKYIKWRSACGKDGVLTKAVKIRITMEKERLDCIPTHLKMLKMDSKFDLFEDRECFACFYDLHLSAVGCKCSPDCYSCLKHSNLFCSCEMNNRFILFRYTMDELSTLVEALEGESHAIEVWANRNTVMVSADAEDACIYKQDVESAICQTQSYKEGKNSTYCAGTNDKSNSTIPSSSYSQISAELVHSEFHHETLSAPSDTKDCHKDSLNEKDLAMDNKIMVGTGGSVDLNIDVMSGEPENYFLHAADYHHNKGVPYVEKVCFAETRKEQDNMEPGADCIASLEKEFSSCSRDVQNSCTLDGYKLFGVDLQMHSDSGEQLNSVSKMGVVETSNTSISLTNQSSLMNNFGISVEPVNLGSVMCGKLWCSKHAIYPKGFKSRVKFFSILDPPRICNYVSEVYGAGFLGPIFKVTMEERPNEAFTNTSADKCWETVLDRLNHEIKRRRSRGEIELPPLELLQSINGHKMFGFLSPSIIQAVEAADPKHQCVEYWNHKEVVSESSGSAIDDCKFSHGSSNSLGDVKTKLFGAGLIKQEQDSIIGNCDSFEEMKLVLQGFLKKASPNELSAMHKLFSSDALFTQWRTAFVSLIEEIQKACA* 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1076 1041 PANTHER LYSINE-SPECIFIC DEMETHYLASE 11 1040 - -
Gso8g1076 1041 SMART fyrc_3 853 948 IPR003889 GO:0005634
Gso8g1076 1041 Pfam F/Y-rich N-terminus 800 844 IPR003888 GO:0005634
Gso8g1076 1041 Gene3D - 795 933 - -
Gso8g1076 1041 SMART cupin_9 244 410 IPR003347 -
Gso8g1076 1041 MobiDBLite consensus disorder prediction 110 145 - -
Gso8g1076 1041 SMART fyrn_3 803 847 IPR003888 GO:0005634
Gso8g1076 1041 Pfam jmjN domain 37 70 IPR003349 -
Gso8g1076 1041 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 11 1040 - -
Gso8g1076 1041 Gene3D Cupin 21 394 - -
Gso8g1076 1041 ProSiteProfiles FYR domain FYRN motif profile. 789 847 IPR003888 GO:0005634
Gso8g1076 1041 Pfam C5HC2 zinc finger 500 552 IPR004198 -
Gso8g1076 1041 SUPERFAMILY Clavaminate synthase-like 250 431 - -
Gso8g1076 1041 ProSiteProfiles FYR domain FYRC motif profile. 849 939 IPR003889 GO:0005634
Gso8g1076 1041 ProSiteProfiles JmjC domain profile. 244 410 IPR003347 -
Gso8g1076 1041 ProSiteProfiles JmjN domain profile. 36 77 IPR003349 -
Gso8g1076 1041 MobiDBLite consensus disorder prediction 110 126 - -
Gso8g1076 1041 Pfam JmjC domain, hydroxylase 277 393 IPR003347 -
Gso8g1076 1041 SMART JmjN_1 35 76 IPR003349 -
Gso8g1076 1041 Pfam F/Y rich C-terminus 851 938 IPR003889 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1076 Gso-Chr8 9953072 9961560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1076 792 976 JUMONJI Transcription Factor Family AT1G30810 52.973 7.02e-54 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gso8g1076 JmjC 1.6e-45 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1076 - - gmx:100814590 2126.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1454 5 38036626 38045324 Gso8g1076 8 9953072 9961560 GST