Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1074 ATGGCCTTGTTCTCTCATTTTCTTGTTCATTTTGCCTTATTACTCATTTTCCTCCCTCTTGAGCTACACAACCTTTTGATTGGTGTATCATCAGCCACTTTAAGCATCACCACAGACAGAGAAGCCTTGATCTCATTTAAGTCTCAACTGAGTAATGAGACTCTTAGCCCTTTATCTTCTTGGAACCATAATTCATCTCCTTGCAATTGGACTGGTGTTCTATGTGACAGGCTTGGCCAAAGAGTAACTGGCTTGGATCTTTCAGGCTTTGGACTCTCAGGTCACTTAAGCCCTTATGTTGGTAACCTTTCCTCTCTTCAGTCTCTCCAATTGCAGAATAACCAATTCAGAGGAGTGATTCCTGACCAAATTGGCAACCTATTAAGTCTTAAAGTTCTAAATATGAGCTATAACATGTTAGAAGGAAAGCTTCCTTCAAACATCACCCACTTGAATGAGCTTCAGGTTCTTGATTTATCCTCAAACAAGATTGTCAGCAAGATTCCTGAAGACATCAGCAGCTTGCAAAAGCTTCAGGCTTTGAAACTAGGAAGGAACAGCCTCTATGGTGCAATACCAGCTTCTCTAGGAAACATTTCTTCTCTAAAAAATATCAGTTTTGGCACCAACTTTCTCACTGGCTGGATTCCCAGTGAATTGGGTAGGCTCCATGATTTGATTGAGCTTGATCTCATTCTCAACAATCTCAATGGGACTGTTCCACCTGCTATATTCAACTTATCTTCCCTTGTCAACTTTGCCTTAGCTTCAAACTCTTTCTGGGGTGAGATTCCTCAGGATGTTGGTCACAAACTTCCAAAACTCATAGTGTTCAATATATGCTTCAATTATTTCACAGGTGGAATTCCAGGGTCTTTGCACAACCTCACCAACATTCAGGTCATTCGTATGGCTTCCAACCATTTGGAAGGAACAGTGCCACCGGGTTTGGGAAATCTCCCATTTCTTAAAATGTATAATATTGGTTATAACAGGATAGTTAGTTCAGGAGTAAGAGGTTTAAACTTCATTACTTCTTTGACAAACAGCACTCACCTGAACTTTCTAGCAATTGATGGAAATATGCTGGAAGGTGTGATTCCAGAAACCATTGGCAATCTCTCCAAGGATCTCTCAACACTATACATGGGACAGAATCGTTTCAATGGAAGCATACCCTCCTCCATTGGTCGTCTCAGTGGCTTGAAGTTGTTAAACTTAAGCTACAATTCAATCTCAGGAGAAATCCCACAAGAGTTAGGCCAGTTAGAGGAACTACAAGAGCTATCTCTGGCTGGGAATGAGATATCAGGAGGTATTCCAAGCATACTTGGTAATCTCCTGAAGTTAAACCTGGTTGATTTGTCAAGAAATAAACTTGTGGGGAGAATACCTACCAGTTTTGGGAATTTGCAAAACCTGCTTTACATGGACTTATCCAGCAACCAACTCAATGGGAGCATACCTATGGAAATCCTCAATCTCCCAACTTTGAGCAATGTTCTGAACTTGTCGATGAACTTTTTGAGTGGACCAATACCTGAAGTTGGGAGATTGAGTGGTGTGGCCTCCATTGACTTTTCCAACAACCAATTGTATGATGGCATCCCCAGCTCATTCAGCAATTGTCTCAGCTTGGAAAAATTATCTTTGGCCAGGAATCAGCTTTCAGGTCCCATTCCAAAGGTTCTTGGAGATGTGAGAGGCTTGGAGGCTTTGGACCTGTCCTCCAACCAACTCTCTGGAGCCATTCCTATTGAACTTCAAAATTTACAGGCGCTTAAGCTCTTAAACCTCTCGTACAATGATTTAGAAGGAGCTATTCCTAGTGGTGGAGTTTTCCAAAACTTTTCTGCCGTCAATTTAGAAGGCAATAAAAATCTCTGCTTGAACTTCCCATGCGTGACTCATGGCCAAGGAAGAAGAAATGTAAGACTTTACATCATCATAGCCATCGTGGTAGCATTAATACTGTGTCTCACAATAGGCTTACTAATATATATGAAGAGCAAAAAAGTGAAGGTAGCAGCAGCAGCATCTGAACAGCTGAAACCTCATGCACCAATGATCTCTTATGATGAGCTCCGTTTGGCAACTGAGGAGTTCAGCCAGGAAAACTTATTAGGAGTTGGAAGCTTTGGCTCAGTTTATAAAGGCCATCTAAGTCATGGAGCTACTGTTGCAGTGAAAGTTCTTGACACTCTAAGAACTGGCTCTTTAAAGAGTTTCTTTGCAGAATGTGAGGCCATGAAGAACTCAAGGCATCGAAATCTGGTTAAGCTGATCACATCATGCTCTAGTATTGACTTTAAAAACAATGATTTTCTGGCTCTGGTGTACGAGTACCTGTGCAATGGTAGCTTGGATGATTGGATCAAGGGGAGGAGAAAGCATGAAAAGGGAAATGGGTTAAACCTTATGGAGAGACTGAACATTGCTCTAGATGTTGCTTGTGCATTGGACTACCTCCACAATGATAGTGAAATTCCAGTAGTGCACTGTGATTTGAAGCCTAGCAACATTCTATTGGATGAAGATATGACAGCAAAGGTTGGAGACTTTGGACTGGCTAGGTTGCTGATTCAAAGATCAACTAGTCAAGTTTCCATAAGCTCCACTCGTGTCCTAAGGGGTTCAATTGGTTACATACCTCCAGAGTATGGATGGGGAGAGAAACCATCTGCTGCTGGTGATGTATACAGTTATGGTATAGTGTTACTAGAAATGTTCTGTGGTAAAAGTCCAACAGATGAGTGTTTCACAGGAGGCCTAAGCATAAGAAGATGGGTGCAATCATCATTGAAAAACAAGACAGTGCAAGTGATTGACCCTCACTTGCTTTCCCTCATTTTTTATGATGACCCTTCTGAGGGATCAAATGTACAACTCAGTTGTGTGGACGCAATTGTTGGAGTTGGCATATCTTGCACTGCAGACAACCCAGATGAACGCATTGGCATTAGAGAAGCTGTTCGTCAACTAAAAGCTGCTAGGGACTCTCTTTCGAATCAGTCTGATGAGAGTCCTACACTTACTAGTACTAGAGATACCTAG 3054 0.4175 MALFSHFLVHFALLLIFLPLELHNLLIGVSSATLSITTDREALISFKSQLSNETLSPLSSWNHNSSPCNWTGVLCDRLGQRVTGLDLSGFGLSGHLSPYVGNLSSLQSLQLQNNQFRGVIPDQIGNLLSLKVLNMSYNMLEGKLPSNITHLNELQVLDLSSNKIVSKIPEDISSLQKLQALKLGRNSLYGAIPASLGNISSLKNISFGTNFLTGWIPSELGRLHDLIELDLILNNLNGTVPPAIFNLSSLVNFALASNSFWGEIPQDVGHKLPKLIVFNICFNYFTGGIPGSLHNLTNIQVIRMASNHLEGTVPPGLGNLPFLKMYNIGYNRIVSSGVRGLNFITSLTNSTHLNFLAIDGNMLEGVIPETIGNLSKDLSTLYMGQNRFNGSIPSSIGRLSGLKLLNLSYNSISGEIPQELGQLEELQELSLAGNEISGGIPSILGNLLKLNLVDLSRNKLVGRIPTSFGNLQNLLYMDLSSNQLNGSIPMEILNLPTLSNVLNLSMNFLSGPIPEVGRLSGVASIDFSNNQLYDGIPSSFSNCLSLEKLSLARNQLSGPIPKVLGDVRGLEALDLSSNQLSGAIPIELQNLQALKLLNLSYNDLEGAIPSGGVFQNFSAVNLEGNKNLCLNFPCVTHGQGRRNVRLYIIIAIVVALILCLTIGLLIYMKSKKVKVAAAASEQLKPHAPMISYDELRLATEEFSQENLLGVGSFGSVYKGHLSHGATVAVKVLDTLRTGSLKSFFAECEAMKNSRHRNLVKLITSCSSIDFKNNDFLALVYEYLCNGSLDDWIKGRRKHEKGNGLNLMERLNIALDVACALDYLHNDSEIPVVHCDLKPSNILLDEDMTAKVGDFGLARLLIQRSTSQVSISSTRVLRGSIGYIPPEYGWGEKPSAAGDVYSYGIVLLEMFCGKSPTDECFTGGLSIRRWVQSSLKNKTVQVIDPHLLSLIFYDDPSEGSNVQLSCVDAIVGVGISCTADNPDERIGIREAVRQLKAARDSLSNQSDESPTLTSTRDT* 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1074 1017 Pfam Protein kinase domain 703 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1074 1017 Gene3D Phosphorylase Kinase; domain 1 673 782 - -
Gso8g1074 1017 SMART serkin_6 702 1002 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1074 1017 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
Gso8g1074 1017 MobiDBLite consensus disorder prediction 998 1017 - -
Gso8g1074 1017 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 25 1001 - -
Gso8g1074 1017 CDD STKc_IRAK 708 995 - -
Gso8g1074 1017 ProSiteProfiles Protein kinase domain profile. 702 1001 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1074 1017 SUPERFAMILY RNI-like 228 611 - -
Gso8g1074 1017 SUPERFAMILY L domain-like 37 333 - -
Gso8g1074 1017 SMART LRR_typ_2 223 247 IPR003591 -
Gso8g1074 1017 SMART LRR_typ_2 567 590 IPR003591 -
Gso8g1074 1017 SMART LRR_typ_2 471 495 IPR003591 -
Gso8g1074 1017 SMART LRR_typ_2 399 423 IPR003591 -
Gso8g1074 1017 SMART LRR_typ_2 591 616 IPR003591 -
Gso8g1074 1017 SMART LRR_typ_2 151 175 IPR003591 -
Gso8g1074 1017 SMART LRR_typ_2 296 320 IPR003591 -
Gso8g1074 1017 SMART LRR_typ_2 103 126 IPR003591 -
Gso8g1074 1017 SMART LRR_typ_2 127 150 IPR003591 -
Gso8g1074 1017 Pfam Leucine rich repeat 378 436 IPR001611 GO:0005515
Gso8g1074 1017 Pfam Leucine rich repeat 545 604 IPR001611 GO:0005515
Gso8g1074 1017 Pfam Leucine rich repeat 105 164 IPR001611 GO:0005515
Gso8g1074 1017 ProSitePatterns Serine/Threonine protein kinases active-site signature. 831 843 IPR008271 GO:0004672|GO:0006468
Gso8g1074 1017 ProSiteProfiles Leucine-rich repeat profile. 153 175 IPR001611 GO:0005515
Gso8g1074 1017 SUPERFAMILY Protein kinase-like (PK-like) 685 994 IPR011009 -
Gso8g1074 1017 PRINTS Leucine-rich repeat signature 570 583 - -
Gso8g1074 1017 PRINTS Leucine-rich repeat signature 591 604 - -
Gso8g1074 1017 Gene3D Ribonuclease Inhibitor 228 340 IPR032675 -
Gso8g1074 1017 Gene3D Transferase(Phosphotransferase) domain 1 783 1015 - -
Gso8g1074 1017 PANTHER OS04G0122200 PROTEIN 25 1001 - -
Gso8g1074 1017 Coils Coil 987 1007 - -
Gso8g1074 1017 Gene3D Ribonuclease Inhibitor 34 227 IPR032675 -
Gso8g1074 1017 ProSitePatterns Protein kinases ATP-binding region signature. 708 730 IPR017441 GO:0005524
Gso8g1074 1017 Gene3D Ribonuclease Inhibitor 341 636 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1074 Gso-Chr8 9939620 9943328 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1074 15 1017 Receptor kinase-like Gene Family AT5G20480 42.274 0.0 720
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gso8g1074 Pkinase 5.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1074 - - gmx:102664710 1899.79