Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1073 ATGGCCTTGTTCTCTCATTTTCTTGTTCATTTTGCCTTATTACTCATTTTCCTCCCTCTTGAGCTACACAACCTTTTGATTGGTGTATCATCAGCCACTTTAAGCATCACCACAGACAGAGAAGCCTTGATCTCATTTAAGTCTCAACTGAGTAATGAGAATCTTAGCCCTTTATCTTCTTGGAACCATAATTCATCTCCTTGCAATTGGACTGGTGTTCTATGTGACAGGCTTGGCCAAAGAGTAACTGGCTTGGATCTTTCAGGCTATGGACTCTCAGGTCACTTAAGCCCTTATGTTGGTAACCTTTCCTCTCTTCAGTCTCTCCAATTGCAGAATAACCAATTCAGAGGAGTGATTCCTGACCAAATTGGCAACCTATTAAGTCTTAAAGTTCTAAATATGAGCTATAACATGTTAGAAGGAAAGCTTCCTTCAAACATCACCCACTTGAATGAGCTTCAGGTTCTTGATTTATCCTCAAACAAGATTGTCAGCAAGATTCCTGAAGACATCAGCAGCTTGCAAAAGCTTCAGGCTTTGAAACTAGGAAGGAACAGCCTCTATGGTGCAATACCAGCATCTCTAGGAAACATTTCTTCCCTAAAAAATATCAGCTTTGGCACCAACTTTCTCACTGGCTGGATTCCCAGTGAATTGGGTAGGCTCCATGATTTGATTGAGCTTGATCTCAGTCTCAACCATCTCAATGGGACTGTTCCACCTGCTATATACAACTTATCTTCCCTTGTCAACTTTGCCTTAGCTTCAAACTCTTTCTGGGGTGAGATTCCTCAGGATGTTGGTCACAAACTTCCAAAACTCATAGTTTTCTGTATCTGCTTCAATTATTTCACAGGTAGAATTCCAGGGTCTTTGCATAACCTCACCAACATTCAGGTCATTCGTATGGCTTCCAACCATTTGGAAGGATCAGTGCCACCTGGTTTGGGAAATCTCCCATTTCTTTGCACGTATAACATTCGGTATAACTGGATAGTGAGTTCAGGTGTTAGAGGTTTAGACTTCATTACTTCTTTGACAAACAGCACTCACCTGAACTTTCTAGCAATTGATGGAAATATGCTGGAAGGTGTGATTCCAGAAACCATTGGCAATCTCTCCAAGGATCTCTCAACACTATACATGGGACAGAATCGTTTCAATGGAAGCATACCCTCCTCCATTGGTCGTCTCAGTGGCTTGAAGTTGTTAAACTTAAGCTACAATTCAATCTCAGGAGAAATCCCACAAGAGTTAGGCCAGTTAGAGGAACTACAAGAGCTATCTCTGGCTGGGAATGAGATATCAGGAGGTATTCCAAGCATACTTGGTAATCTCCTGAAGTTAAACCTGGTTGATTTGTCAAGAAATAAACTTGTGGGGAGAATACCTACCAGTTTTGGGAATTTGCAAAACCTGCTTTACATGGACTTATCCAGCAACCAACTCAATGGAAGCATACCTATGGAAATCCTCAATCTCCCAACTTTGAGCAATGTTCTGAACTTGTCGATGAACTTTTTGAGTGGACCAATACCTGAAGTTGGCAGATTGAGTAGTGTGGCCTCCATTGACTTTTCTAACAACCAATTGTATGGTGGCATCCCCAGCTCATTCAGCAATTGTCTCAGCTTGGAAAAACTGTTTTTGCCTCGGAATCAGCTTTCAGGTCCCATTCCAAAGGCTCTTGGAGATGTGAGAGGCTTGGAAACTTTGGATCTGTCCTCCAACCAACTCTCTGGAACCATTCCTATTGAACTTCAAAATTTACACGGGCTTAAGCTCTTAAACCTCTCGTACAATGATATAGAAGGAGCCATTCCTGGTGCTGGAGTTTTCCAAAATCTCTCTGCTGTCCATTTAGAAGGCAATAGAAAACTCTGCTTGCATTTCTCATGCATGCCTCATGGCCAAGGAAGAAAAAATATAAGACTTTACATCATGATAGCCATCACGGTAACATTGATACTATGTCTCACTATTGGCTTATTACTATATATCGAGAACAAAAAGGTGAAGGTAGCACCAGTTGCAGAATTTGAACAGCTTAAACCTCATGCACCAATGATCTCTTATGATGAGCTTCTTTTGGCAACTGAGGAGTTCAGCCAGGAAAACCTATTAGGAGTTGGAAGCTTTGGCTCAGTTTATAAAGGCCATCTAAGTCATGGAGCTACCGTTGCAGTGAAAGTTCTTGACACCCTAAGAACTGGCTCTTTGAAGAGTTTCTTTGCCGAATGTGAGGCTATGAAGAACTCAAGGCATCGAAATCTGGTTAAGCTGATCACATCATGCTCTAGTATTGACTTTAAAAACAATGATTTTCTGGCTCTGGTGTACGAGTACCTGTGCAATGGTAGCTTGGATGATTGGATCAAGGGGAGGAGAAAGCATGAAAAGGGAAATGGGTTAAACCTTATGGAAAGACTGAACATTGCTCTAGATGTTGCTTGTGCATTGGACTACCTCCACAATGATAGTGAAATTCCAGTAGTGCACTGTGATTTGAAGCCTAGCAACATTCTATTGGATGAAGATATGACAGCAAAGGTTGGAGACTTTGGATTGGCTAGGTTGCTGATTCAAAGATCAACTAGTCAAGTTTCCATAAGCTCCACTCGTGTCCTTAGGGGTTCAATTGGTTACATACCTCCAGAGTATGGATGGGGAGAGAAACCATCTGCAGCTGGTGATGTATATAGTTTTGGTATAGTGTTACTAGAAATGTTCTCTGGTAAAAGTCCAACAGATGAGTGTTTCACAGGAGACCTAAGCATAAGAAGATGGGTGCAATCATCATGTAAAGACAAGATAGTGCAAGTGATTGACCCTCAGTTACTATCCCTCATTTTTAATGATGACCCTTCTGAGGGAGAGGGGCCAATTCTGCAACTTTATTGTGTGGATTCAATTGTAGGAGTTGGCATAGCTTGCACTACAAACAACCCAGATGAACGCATTGGCATCAGAGAAGCTGTTCGTCGACTAAAAGCTGCTAGGGACTCTCTTTTGAATTAG 3021 0.4171 MALFSHFLVHFALLLIFLPLELHNLLIGVSSATLSITTDREALISFKSQLSNENLSPLSSWNHNSSPCNWTGVLCDRLGQRVTGLDLSGYGLSGHLSPYVGNLSSLQSLQLQNNQFRGVIPDQIGNLLSLKVLNMSYNMLEGKLPSNITHLNELQVLDLSSNKIVSKIPEDISSLQKLQALKLGRNSLYGAIPASLGNISSLKNISFGTNFLTGWIPSELGRLHDLIELDLSLNHLNGTVPPAIYNLSSLVNFALASNSFWGEIPQDVGHKLPKLIVFCICFNYFTGRIPGSLHNLTNIQVIRMASNHLEGSVPPGLGNLPFLCTYNIRYNWIVSSGVRGLDFITSLTNSTHLNFLAIDGNMLEGVIPETIGNLSKDLSTLYMGQNRFNGSIPSSIGRLSGLKLLNLSYNSISGEIPQELGQLEELQELSLAGNEISGGIPSILGNLLKLNLVDLSRNKLVGRIPTSFGNLQNLLYMDLSSNQLNGSIPMEILNLPTLSNVLNLSMNFLSGPIPEVGRLSSVASIDFSNNQLYGGIPSSFSNCLSLEKLFLPRNQLSGPIPKALGDVRGLETLDLSSNQLSGTIPIELQNLHGLKLLNLSYNDIEGAIPGAGVFQNLSAVHLEGNRKLCLHFSCMPHGQGRKNIRLYIMIAITVTLILCLTIGLLLYIENKKVKVAPVAEFEQLKPHAPMISYDELLLATEEFSQENLLGVGSFGSVYKGHLSHGATVAVKVLDTLRTGSLKSFFAECEAMKNSRHRNLVKLITSCSSIDFKNNDFLALVYEYLCNGSLDDWIKGRRKHEKGNGLNLMERLNIALDVACALDYLHNDSEIPVVHCDLKPSNILLDEDMTAKVGDFGLARLLIQRSTSQVSISSTRVLRGSIGYIPPEYGWGEKPSAAGDVYSFGIVLLEMFSGKSPTDECFTGDLSIRRWVQSSCKDKIVQVIDPQLLSLIFNDDPSEGEGPILQLYCVDSIVGVGIACTTNNPDERIGIREAVRRLKAARDSLLN* 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1073 1006 ProSitePatterns Protein kinases ATP-binding region signature. 709 731 IPR017441 GO:0005524
Gso8g1073 1006 SMART LRR_typ_2 591 616 IPR003591 -
Gso8g1073 1006 SMART LRR_typ_2 471 495 IPR003591 -
Gso8g1073 1006 SMART LRR_typ_2 127 150 IPR003591 -
Gso8g1073 1006 SMART LRR_typ_2 399 423 IPR003591 -
Gso8g1073 1006 SMART LRR_typ_2 151 175 IPR003591 -
Gso8g1073 1006 SMART LRR_typ_2 223 247 IPR003591 -
Gso8g1073 1006 SMART LRR_typ_2 567 590 IPR003591 -
Gso8g1073 1006 SMART LRR_typ_2 296 320 IPR003591 -
Gso8g1073 1006 SMART LRR_typ_2 103 126 IPR003591 -
Gso8g1073 1006 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
Gso8g1073 1006 ProSiteProfiles Leucine-rich repeat profile. 153 175 IPR001611 GO:0005515
Gso8g1073 1006 SMART LRR_sd22_2 223 249 - -
Gso8g1073 1006 SMART LRR_sd22_2 127 150 - -
Gso8g1073 1006 SMART LRR_sd22_2 567 593 - -
Gso8g1073 1006 SMART LRR_sd22_2 423 449 - -
Gso8g1073 1006 SMART LRR_sd22_2 151 174 - -
Gso8g1073 1006 ProSitePatterns Serine/Threonine protein kinases active-site signature. 832 844 IPR008271 GO:0004672|GO:0006468
Gso8g1073 1006 SUPERFAMILY Protein kinase-like (PK-like) 685 997 IPR011009 -
Gso8g1073 1006 Gene3D Phosphorylase Kinase; domain 1 684 783 - -
Gso8g1073 1006 Pfam Leucine rich repeat 105 164 IPR001611 GO:0005515
Gso8g1073 1006 Pfam Leucine rich repeat 378 436 IPR001611 GO:0005515
Gso8g1073 1006 Pfam Leucine rich repeat 545 604 IPR001611 GO:0005515
Gso8g1073 1006 Gene3D Ribonuclease Inhibitor 239 337 IPR032675 -
Gso8g1073 1006 SUPERFAMILY L domain-like 378 629 - -
Gso8g1073 1006 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 25 1003 - -
Gso8g1073 1006 Pfam Protein kinase domain 704 918 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1073 1006 SUPERFAMILY L domain-like 37 333 - -
Gso8g1073 1006 PANTHER OS04G0122200 PROTEIN 25 1003 - -
Gso8g1073 1006 SMART serkin_6 703 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1073 1006 Gene3D Ribonuclease Inhibitor 38 147 IPR032675 -
Gso8g1073 1006 Gene3D Ribonuclease Inhibitor 338 633 IPR032675 -
Gso8g1073 1006 ProSiteProfiles Protein kinase domain profile. 703 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1073 1006 Gene3D Transferase(Phosphotransferase) domain 1 784 1004 - -
Gso8g1073 1006 Gene3D Ribonuclease Inhibitor 148 238 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1073 Gso-Chr8 9931885 9935836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1073 15 1006 Receptor kinase-like Gene Family AT5G20480 42.576 0.0 712
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gso8g1073 Pkinase 3.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1073 - - gmx:100813523 1905.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1452 5 38010405 38013761 Gso8g1073 8 9931885 9935836 GST