Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1048 ATGGTGATCTGTTATAAACAGCTGGGAGAATATCATTTCTTTCTTGTTTTGCTTCTCATTTCAGTCCAATGCGTTATTGCCGCAAATAACATTTTGAAGCCCGGAGATACACTGAATACGAGAAGCCAGCTATGTTCAGAAAACAACATATACTGCATGGATTTTTCCCCATTAAACACAAATCCTATTGTAAACTACACTCACTTAAGCATCAGTGACAACAGAAAGGACGATAATTCCGCAGTGTGGGTTGCTAATAGAAATCAACCCGTTGACAAGCATTCTGCAGTTCTGATGCTAAACCACTCTGGTGTACTCAAAATTGAATCATCCAAAGATGCCAAACCCATCATCCTTTTTTCTTCACCTCAACCACTGAACAACAACAACACCGAAGCCAAGCTGTTGGATACAGGTAACTTTGTGGTGCAACAACTTCACCCCAATGGAACAAACACTGTGTTGTGGCAAAGTTTTGATTACCCTACTGATACTCTTCTCCCTGGGATGAAGTTAGGAGTTAATCACAAAACTGGTCATAACTGGTCACTTGTTTCGTGGTTGGCTGTATCCGACCCCAGAATCGGGGCATTCAGGTTCGAGTGGGAACCCATAAGAAGAGAATTGATCATCAAGGAACGAGGAAGATTGTCCTGGACAAGTGGAGAACTCAGAAACAACAATGGATCCATTCACAACACCAAGTACACGATTGTCTCAAACGACGACGAAAGCTACTTCACAATTACAACAACAAGTTCAAATGAACAAGAGCTTATAATGTGGGAAGTATTGGAAACTGGGCGGTTGATAGATAGGAATAAAGAAGCTATTGCAAGGGCTGATATGTGTTATGGTTACAACACAGATGGAGGGTGCCAAAAGTGGGAGGAGATACCCACATGTAGGCATAGCGGTGATGCATTTGAAACCAGGGAAGTTTACGTCAGTATGAACATGCTAAACAATCTAGGTAATTCGAGTTATGGCCCAAGTGATTGCCGGGATATTTGCTGGGAAAATTGTGCTTGTAATGGATACAGAAATTACTATGATGGTGGAACTGGTTGTACTTTCTTGCATTGGAATTCAACCGAAGAAGCTAATTTTGCAAGTGGGGGCGAAACGTTTCATATATTGGTCAACAACACCCACCACAAAGGTACAAAAAAGTGGATATGGATAACTGTAGCAGTAGTTGTTCCATTTGTGATATGTGCTTTCATTCTATTTCTGGCCTTGAAGAAAAGAAAACATCTGTTTGAAGAGAAGAAAAGAAATAGAATGGAGACTGGGATGTTGGATTCGGCAATTAAAGATCTTGAAGATGAGTTCAAGAAGAGACAAAATCTAAAAGTATTTAAGTATACTTCAGTACTGTCGGCAACCAATGATTTTTCACCAGAAAACAAGTTAGGACAAGGAGGCTTTGGACCAGTTTATAAGGGAATCCTACCAACTGGGCAAGAAGCTGCTATTAAAAGACTTTCAAAAACATCTAGACAAGGGGTTGTGGAATTCAAAAATGAGCTAATGCTCATATGTGAACTTCAACACATGAATCTTGTACAACTACTTGGATGCTGCATTCATGAAGAAGAGAGGATTCTAATTTATGAGTATATGCCAAACAAAAGCTTGGATTTCTATCTATTCGAAGATTGCACTCGAAGCAAGTTACTAGATTGGAAGAAGCGTTTCAACATAATAGAAGGAATTTCTCAAGGATTACTCTATCTTCACAAGTACTCGAGACTCAAAGTCATTCACAGAGACTTAAAAGCTAGTAACATACTTCTTGATGAGAATATGAATCCAAAAATTTCTGATTTTGGATTGGCAAGAATGTTTGAGGAACAAGAATCTACAACAACTACGAGTAGGATTATTGGGACATATGGTTATATGTCTCCTGAGTATGCTATGGAAGGAATTGTTTCTGTAAAGTCTGATGTTTATAGCTTTGGAGTGTTGGTCCTTGAAATTATTAGTGGGAGAAGAAATACTAGCTTCAATGACGACCGCCCGATGAATTTGATAGGACATGCATGGGAGTTATGGAATCAAGGTGTGCCTCTACAATTAATGGATCCATCGCTTAATGATTTGTTTGATCTCAATGAAGTGACAAGATGCATTCACATTGGTCTCATATGCGTAGAAAAATATGCAAATGATCGACCCACAATGTCTCAAATAATTTCAATGTTAACAAATGAAAGTGTAGTAGTTCCCTTGCCTCGAAAACCAGCATTCTATGTGGAAAGAGAAATTTTACTCAGAAAAGCATCTTCCAAAGAGTTATGTACAAACTCTACTGATGAAATTACTATTACCTAG 2340 0.388 MVICYKQLGEYHFFLVLLLISVQCVIAANNILKPGDTLNTRSQLCSENNIYCMDFSPLNTNPIVNYTHLSISDNRKDDNSAVWVANRNQPVDKHSAVLMLNHSGVLKIESSKDAKPIILFSSPQPLNNNNTEAKLLDTGNFVVQQLHPNGTNTVLWQSFDYPTDTLLPGMKLGVNHKTGHNWSLVSWLAVSDPRIGAFRFEWEPIRRELIIKERGRLSWTSGELRNNNGSIHNTKYTIVSNDDESYFTITTTSSNEQELIMWEVLETGRLIDRNKEAIARADMCYGYNTDGGCQKWEEIPTCRHSGDAFETREVYVSMNMLNNLGNSSYGPSDCRDICWENCACNGYRNYYDGGTGCTFLHWNSTEEANFASGGETFHILVNNTHHKGTKKWIWITVAVVVPFVICAFILFLALKKRKHLFEEKKRNRMETGMLDSAIKDLEDEFKKRQNLKVFKYTSVLSATNDFSPENKLGQGGFGPVYKGILPTGQEAAIKRLSKTSRQGVVEFKNELMLICELQHMNLVQLLGCCIHEEERILIYEYMPNKSLDFYLFEDCTRSKLLDWKKRFNIIEGISQGLLYLHKYSRLKVIHRDLKASNILLDENMNPKISDFGLARMFEEQESTTTTSRIIGTYGYMSPEYAMEGIVSVKSDVYSFGVLVLEIISGRRNTSFNDDRPMNLIGHAWELWNQGVPLQLMDPSLNDLFDLNEVTRCIHIGLICVEKYANDRPTMSQIISMLTNESVVVPLPRKPAFYVEREILLRKASSKELCTNSTDEITIT* 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1048 779 PIRSF SRK 6 281 IPR024171 GO:0004674
Gso8g1048 779 PIRSF SRK 274 779 IPR024171 GO:0004674
Gso8g1048 779 SUPERFAMILY Protein kinase-like (PK-like) 450 756 IPR011009 -
Gso8g1048 779 ProSiteProfiles Bulb-type lectin domain profile. 29 156 IPR001480 -
Gso8g1048 779 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 12 761 - -
Gso8g1048 779 Pfam Protein tyrosine and serine/threonine kinase 469 736 IPR001245 GO:0004672|GO:0006468
Gso8g1048 779 Pfam D-mannose binding lectin 81 187 IPR001480 -
Gso8g1048 779 Gene3D - 23 159 IPR036426 -
Gso8g1048 779 CDD STKc_IRAK 472 739 - -
Gso8g1048 779 Gene3D Transferase(Phosphotransferase) domain 1 542 743 - -
Gso8g1048 779 SMART blect_4 29 162 IPR001480 -
Gso8g1048 779 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 12 761 - -
Gso8g1048 779 ProSitePatterns Serine/Threonine protein kinases active-site signature. 588 600 IPR008271 GO:0004672|GO:0006468
Gso8g1048 779 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 188 IPR036426 -
Gso8g1048 779 Gene3D Phosphorylase Kinase; domain 1 429 541 - -
Gso8g1048 779 SMART serkin_6 466 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1048 779 ProSiteProfiles Protein kinase domain profile. 466 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1048 Gso-Chr8 9696304 9699147 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1048 404 779 Receptor kinase-like Gene Family AT3G45860 48.438 3.03e-121 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso8g1048 PK_Tyr_Ser-Thr 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1048 - - gmx:100809767 1592.79