Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1036 ATGACCTCTGCTCACGACCTTACTGATAATGAAGATGATGGACAGCAGCAGTCAGAATCACAAATTCAGTCCCCTTCTGCAAATGGAATTTCTGATCCAGATATTAGTACCCAGAATGTCAATGTACAGTATGCAACACCTGGCCAGCTTGGAACTGGGCATGCAATGGTACCACCTGTGTATCCATATCCAGATCCTTACTATAGAAGCATCTTTGCTCCCTATGATACACAACCTTATCCCCCGCAAGCCTATAGTGGACAGCCAATGGTCCATCTTCAGTTAATGGGAATTCAGCAAGCTGGTGTTCCTCTGCCAACTGATGCAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAATACCACGGTATATTAAGACGTAGACAATCCCGTGCAAAAGCTGAATCAGAAAATAAAGTTATAAGGAATAGGAAGCCATACTTGCATGAATCTCGACACAAGCATGCACTGAGAAGACCAAGAGGATGTGGTGGTCGGTTTCTGAATTCAAAGAAAGACGAGAATCAGCATGATGATGTGACATCAGCTGACAAATCACAATCCAATATCAATCTCAATTCTAATAAAAATGATCAAACCTCATCAGATAGGACATCCTAA 621 0.4235 MTSAHDLTDNEDDGQQQSESQIQSPSANGISDPDISTQNVNVQYATPGQLGTGHAMVPPVYPYPDPYYRSIFAPYDTQPYPPQAYSGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVIRNRKPYLHESRHKHALRRPRGCGGRFLNSKKDENQHDDVTSADKSQSNINLNSNKNDQTSSDRTS* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1036 206 MobiDBLite consensus disorder prediction 182 206 - -
Gso8g1036 206 MobiDBLite consensus disorder prediction 145 206 - -
Gso8g1036 206 Gene3D - 110 171 - -
Gso8g1036 206 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 2 189 IPR001289 GO:0003700|GO:0006355
Gso8g1036 206 MobiDBLite consensus disorder prediction 146 161 - -
Gso8g1036 206 MobiDBLite consensus disorder prediction 166 181 - -
Gso8g1036 206 SMART cbf3 109 170 IPR001289 GO:0003700|GO:0006355
Gso8g1036 206 MobiDBLite consensus disorder prediction 14 39 - -
Gso8g1036 206 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 112 167 IPR001289 GO:0003700|GO:0006355
Gso8g1036 206 ProSiteProfiles NF-YA/HAP2 family profile. 110 170 IPR001289 GO:0003700|GO:0006355
Gso8g1036 206 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 2 189 - -
Gso8g1036 206 PRINTS CCAAT-binding transcription factor subunit B signature 113 135 IPR001289 GO:0003700|GO:0006355
Gso8g1036 206 PRINTS CCAAT-binding transcription factor subunit B signature 144 167 IPR001289 GO:0003700|GO:0006355
Gso8g1036 206 ProSitePatterns NF-YA/HAP2 subunit signature. 115 135 IPR018362 GO:0003677|GO:0016602
Gso8g1036 206 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1036 Gso-Chr8 9546929 9551023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1036 2 206 CCAAT-HAP2 Transcription Factor Family AT1G30500 57.488 4.97e-74 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gso8g1036 CBFB_NFYA 4.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1036 K08064 - gmx:100499754 402.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1414 5 37583793 37588932 Gso8g1036 8 9546929 9551023 GST