Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1034 ATGATTGGCAGGTTTCTTACAGGTAAAAGAAGATTGCAGGATTTATTGCTTCAAAAAGATAATCGCTTTTGTGCTGATTGCAATGCTCCAGATCCTAAATGGGCGTCAGCCAATATTGGAGTTTTCGTATGCTTAAAATGCTGTGGTGTGCACAGAAGTCTTGGCTCTCAGATATCAAAGGTTTTATCTGTGACATTGGATGAATGGTCAAGTGATGAAATAGATGCAATGATTGAAGTTGGAGGAAATTCTTCTGCTAATTCAATTTATGAGGCTTATTTTCCAGAAGGATTTACAAAACCTGGACCAGATGCCACTCATGATCAGCGTGTGAAATTCATCCGGTTAAAGTATGAGCATCAAGAATTTTTGCAACCTAGTTTGCGCATTGTGTCAGGAAAAAGCAACCCCCCAAAAAGTATATCCAAAGGGATTATGGATAGTTTTCGAATTACAAGTGATTCACAGCATATGGAAGGAATGGTAGAATTTATTGGAATGTTAAAGGTGAAAGTGATCAAAGGCACAGATTTAGCTATCAGAGATATGATGACAAGTGATCCATATGTTATCTTGAAACTTGGCCAACAGACTGTTCAGACAACTGTAATAAAGAGTAATTTGAATCCAGTCTGGAATGAGGAACTTATGCTGTCTGTTCCTCAGCAATTTGGAATATTGAATTTGAATGTATTTGATTATGACTTGTTTTCGGCTGATGACATAATGGGGGAAGCAGATATTGATCTTCAGCCCCTGATAACATCCGCAATCGCATACGGTGATGCTAGAATGTTTGATGATATGCAGATAGGAAAATGGCTGAAATCCAATGGCAATGCGCTTATAGATGATAGCATAGTTAATATAGTTGATGGTAAGGTTAAACAAGTCATATCACTCAAGCTCCAGAATGTTGAATCTGGAGAATTAGACTTAGAACTCGAGTGGATGCCTCTTGATTATTAG 969 0.3777 MIGRFLTGKRRLQDLLLQKDNRFCADCNAPDPKWASANIGVFVCLKCCGVHRSLGSQISKVLSVTLDEWSSDEIDAMIEVGGNSSANSIYEAYFPEGFTKPGPDATHDQRVKFIRLKYEHQEFLQPSLRIVSGKSNPPKSISKGIMDSFRITSDSQHMEGMVEFIGMLKVKVIKGTDLAIRDMMTSDPYVILKLGQQTVQTTVIKSNLNPVWNEELMLSVPQQFGILNLNVFDYDLFSADDIMGEADIDLQPLITSAIAYGDARMFDDMQIGKWLKSNGNALIDDSIVNIVDGKVKQVISLKLQNVESGELDLELEWMPLDY* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1034 322 CDD ArfGap 12 118 - -
Gso8g1034 322 PRINTS HIV Rev interacting protein signature 21 40 IPR001164 GO:0005096
Gso8g1034 322 PRINTS HIV Rev interacting protein signature 40 57 IPR001164 GO:0005096
Gso8g1034 322 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Gso8g1034 322 ProSiteProfiles C2 domain profile. 145 263 IPR000008 -
Gso8g1034 322 SMART arf_gap_3 9 131 IPR001164 GO:0005096
Gso8g1034 322 Gene3D C2 domain 164 321 IPR035892 -
Gso8g1034 322 CDD C2_ArfGAP 165 309 - -
Gso8g1034 322 SUPERFAMILY ArfGap/RecO-like zinc finger 9 125 IPR037278 -
Gso8g1034 322 SMART C2_3c 167 262 IPR000008 -
Gso8g1034 322 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 1 322 IPR044518 GO:0005096|GO:0005543
Gso8g1034 322 Pfam Putative GTPase activating protein for Arf 10 125 IPR001164 GO:0005096
Gso8g1034 322 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 166 311 IPR035892 -
Gso8g1034 322 Pfam C2 domain 167 256 IPR000008 -
Gso8g1034 322 ProSiteProfiles ARF GTPase-activating proteins domain profile. 9 123 IPR001164 GO:0005096
Gso8g1034 322 Gene3D Arf GTPase activating protein 6 129 IPR038508 -
Gso8g1034 322 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 1 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1034 Gso-Chr8 9536833 9540423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1034 2 321 C2H2 Transcription Factor Family AT4G21160 71.733 0.0 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1034 K12486 - gmx:100806567 647.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1412 5 37571518 37575228 Gso8g1034 8 9536833 9540423 GST