Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1009 ATGCCCCGTAAAGTAAATTACGGACTCGATTACGACGACGATTACTATGATGATGATTATGATGACTATGCTTATGATGATGTTGATGCAGAAGACTATGGAGGACCTGATACAAAGCAAGAGACCATTAAGCTTGGCCTTTGGCAATGCTCCATTTGCACTTATGACAACGATGAGAGTATGACTTTTTGTGATATTTGTGGTGTTGTACGCCGTCCCTTGGTTAATACTGGAACTTCCAACAGTAACAAAACAGTTGAAGACGTAACCAAAAGTCCTGGAGCATCCAAGTTGGCCAGATCTCTTTTTCAATCATTACAACAACAGATTGCCAAAGAGACTGTATTATTTCCAAAGCCAGATGATGGTTTTCTGACAGATGGCAGTAACTTCTACAAGCTTGACAATGTCCGAGGAGAATTTCATGAAATTCATAAGGATTTTAGTACTCAAAGCCATCCACATTTAAACATAGATCCTTTCAAGTTCAATGTTCCATCCCCCGACGATGTGGTTTATACTGGCCTACGTTCTTCCAAAACGGGTTTGAAAGACAAAGCTACAAACTCTAATTCTCAGCTTTCATCAAGCACCAGAGAGAAGAATGAACTTTCTGTACAGTCAAATGCTGAAAGTTCAGACAACTTATCATCCTTAATGCAAAAGAGCAGACAGGATAGTTCAACTGAGAGCAAGCTTTCCAAAAAAGTAGCAATTGATCTGCAAACAAGTGGTAAAACTTCAAACAGCTTGCCGGAATCTTTGTCAAAAGACAAAGATAACAATATTAATAAAATAAATTCTTCGAAAAATGGTACAATTGATATTCAATCAAGCAAAGAAAAGTCAGGTAGTTTGTCTACACGGTCAAAAGTCAAGGAAAGTGATAACATCAGTTCCTCTTCTATCAAAGATGGAAAACCTGAAAGTATTTCCAGCAGTTTCAGCAACATGGTTGTCGATGTAAGATTTGGAAATTCTGATAACACTAATGCTAAAGGAACTCACTCACGTGTTTCTTATAAGCCAGAAAAATGGATGCTCCCTGAACAAGCTGAAGATACATTGACTCAGCTGAATCTTGCAATTGTTGGCCATGTTGATTCTGGAAAATCAACTCTATCTGGTAGGTTACTGCACCTATTGGGACGGATCTCCCAGAAAGAAATGCACAAATATGAAAAGGAGGCCAAGTTACAGGGCAAGGGATCCTTTGCTTATGCTTGGGCACTTGATGAAAGTTCTGAAGAAAGAGAACGGGGAATAACTATGACAGTGGCTGTTGCTTATTTTGACACGATGAGATATCATGTTGTTGTGCTCGATTCCCCTGGCCATAAAGATTTTGTCCCAAACATGATTTCTGGGGCAACACAAGCTGATGCTGCAATTCTTGTTATAGATGCCTCACTTGGTTCATTTGAAGCTGGTATGGATGGCAGCAAAGGGCAAACAAGGGAGCATGCACAACTTATCAGAAGCTTTGGTGTTGACCGGGTTATAGTTGCTGTAAATAAGATGGATGCTGTTGCGTACTCCCAAGATCGATTTGATTTTATAAGGCAGCAGCTGGGAGTTTTTCTCCACTTTTGTGGTTTCAAAGATTCTTCTCTATCTTGGATTCCCATGAGTGCCATGGAAAATCAAAATTTGGTGGCATCCCCTTCTGATGCTCGTTTAAAAAACTGGTATGGTGGACCTTATCTATTAGATGCAATTGACTCTCTCCAACCTCCTACTAGAGAATTCTCAAAACCTCTACTAATGCCAATATGTGATGTCATCAAATCAACTACACTTGGACAGGTTTCTGCCTCTGGTAAACTGGAAGCAGGAGCTCTTCGGAGTGGATCAAAGGTCTTGGTTATGCCTTCAGCTGTTGTGGGAACAGTACGCTCATTGGAGCGTGACTCTAATGCTTGTACTGTTGCAAGAGCTGGAGATAATGTAGCTGTAACGTTGCAAGGTGTGGATGGAAATCATGTGATGGCAGGAGATGTACTATGCCATCCTGACTTTCCTGTTGCAGTTGCTAAGCATTTGGAGTTGAAAGTGTTAGTGTTGGATGGTGCAAGTCCCATATTGGTGGGCACACAGTTAGAGTTTCACATACACCATGCAAAGGAACCTGGCAGAGTTTCAAGAATATTATCAGTACTTGATCCCAAGACGGGTAAGGTGACCAAAAAGTCACCTCGCTGTCTCTCTGCAAAGCAAAGTGCAGTAATTGAGGTGATTTTGAATGAGACAGTCTGTGTGGTAGAGTTCTCTAGTTGTAAAGCTCTTGGAAGGGTATCCCTAAGATCAATGGGAAGAACGATTGCTGTTGGAGTTGTGACAAGAATAATTGAAGAACAAGGTTAA 2364 0.4082 MPRKVNYGLDYDDDYYDDDYDDYAYDDVDAEDYGGPDTKQETIKLGLWQCSICTYDNDESMTFCDICGVVRRPLVNTGTSNSNKTVEDVTKSPGASKLARSLFQSLQQQIAKETVLFPKPDDGFLTDGSNFYKLDNVRGEFHEIHKDFSTQSHPHLNIDPFKFNVPSPDDVVYTGLRSSKTGLKDKATNSNSQLSSSTREKNELSVQSNAESSDNLSSLMQKSRQDSSTESKLSKKVAIDLQTSGKTSNSLPESLSKDKDNNINKINSSKNGTIDIQSSKEKSGSLSTRSKVKESDNISSSSIKDGKPESISSSFSNMVVDVRFGNSDNTNAKGTHSRVSYKPEKWMLPEQAEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKYEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTMRYHVVVLDSPGHKDFVPNMISGATQADAAILVIDASLGSFEAGMDGSKGQTREHAQLIRSFGVDRVIVAVNKMDAVAYSQDRFDFIRQQLGVFLHFCGFKDSSLSWIPMSAMENQNLVASPSDARLKNWYGGPYLLDAIDSLQPPTREFSKPLLMPICDVIKSTTLGQVSASGKLEAGALRSGSKVLVMPSAVVGTVRSLERDSNACTVARAGDNVAVTLQGVDGNHVMAGDVLCHPDFPVAVAKHLELKVLVLDGASPILVGTQLEFHIHHAKEPGRVSRILSVLDPKTGKVTKKSPRCLSAKQSAVIEVILNETVCVVEFSSCKALGRVSLRSMGRTIAVGVVTRIIEEQG* 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1009 787 PRINTS GTP-binding elongation factor signature 360 373 IPR000795 GO:0003924|GO:0005525
Gso8g1009 787 PRINTS GTP-binding elongation factor signature 419 427 IPR000795 GO:0003924|GO:0005525
Gso8g1009 787 PRINTS GTP-binding elongation factor signature 439 449 IPR000795 GO:0003924|GO:0005525
Gso8g1009 787 PRINTS GTP-binding elongation factor signature 455 466 IPR000795 GO:0003924|GO:0005525
Gso8g1009 787 PRINTS GTP-binding elongation factor signature 500 509 IPR000795 GO:0003924|GO:0005525
Gso8g1009 787 Pfam Elongation factor Tu GTP binding domain 359 575 IPR000795 GO:0003924|GO:0005525
Gso8g1009 787 SMART zf_4 46 70 IPR001876 -
Gso8g1009 787 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 601 IPR027417 -
Gso8g1009 787 CDD HBS1_C_III 674 782 - -
Gso8g1009 787 Gene3D Translation factors 584 673 - -
Gso8g1009 787 Gene3D Translation factors 677 786 - -
Gso8g1009 787 Gene3D - 347 580 IPR027417 -
Gso8g1009 787 ProSitePatterns Zinc finger RanBP2-type signature. 48 67 IPR001876 -
Gso8g1009 787 Pfam Elongation factor Tu C-terminal domain 675 782 IPR004160 -
Gso8g1009 787 SUPERFAMILY Translation proteins 578 673 IPR009000 -
Gso8g1009 787 MobiDBLite consensus disorder prediction 234 257 - -
Gso8g1009 787 CDD HBS1-like_II 586 670 - -
Gso8g1009 787 ProSiteProfiles Zinc finger RanBP2 type profile. 44 73 IPR001876 -
Gso8g1009 787 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 356 587 IPR000795 GO:0003924|GO:0005525
Gso8g1009 787 PANTHER OS04G0595300 PROTEIN 52 785 - -
Gso8g1009 787 SUPERFAMILY Ran binding protein zinc finger-like 47 71 IPR036443 -
Gso8g1009 787 MobiDBLite consensus disorder prediction 181 311 - -
Gso8g1009 787 PANTHER TRANSLATION FACTOR 52 785 - -
Gso8g1009 787 Pfam Elongation factor Tu domain 2 605 669 IPR004161 GO:0005525
Gso8g1009 787 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 679 783 IPR009001 -
Gso8g1009 787 CDD EF1_alpha 360 579 - -
Gso8g1009 787 MobiDBLite consensus disorder prediction 181 227 - -
Gso8g1009 787 MobiDBLite consensus disorder prediction 265 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1009 Gso-Chr8 9373750 9381180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1009 46 83 Eukaryotic Initiation Factors Gene Family AT5G10630 57.895 6.16e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1009 K14416 - gmx:100801724 1407.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1393 5 37407669 37415250 Gso8g1009 8 9373750 9381180 GST
Gso15g0796 15 7319222 7322620 Gso8g1009 8 9373750 9381180 PCT