Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1004 ATGGCTTTTCCAAACCAATCCATGTCATCAGAGTCTCCCCAGAGAAAGATGGGAAGAGGGAAGATTGAGATCAAGAGGATTGAGAACACCACCAGTCGACAAGTTACCTTCTGCAAGCGCAGAAATGGCTTGCTCAAGAAGGCATATGAGTTATCTGTGCTTTGTGATGCAGAGGTTGCTCTAATTGTCTTTTCAAACCGTGGCCGCCTCTATGAATATGCTAATAACAGCGTCAAAGCTTCAATTGAGAGGTACAAGAAAGCAAGTTCAGATTCATCTAGTGGTGGACGATCTGCTTCTGAGGCTAATGCTCAGTTTTATCAGCAAGAAGCAGCCAAACTGCGTGTGCAGATCAGCAATCTGCAGAATCACAATAGGCAAATGATGGGTGAGGGTTTGAGCACCATGAATGGCAAGGATCTCAAAAACCTAGAGACTAAATTAGAAAAAGGAATCAGCAGAATTCGTTCCAAGAAGAATGAGATGCTATTTGCAGAAATTGAGCACATGAAGAAAAGGATTGCACAGGAGATATACTTGCACAATGACAACCAGCTTCTTAGAGCAAAGATAGGAGAAGGTGAGAGGAGTCACCATAATGTTAACGGGTTGTCTGGAAGCACAAGCTATGAATCGATGCAATCTCAGTTTGACTCTCGCGGCTTCTTCCAAGTGACTGGATTACAACCTAATAATAATAATCAGTATGCCGGGCAAGACATGTCCCTTCAATTTGTTTGA 741 0.4291 MAFPNQSMSSESPQRKMGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYANNSVKASIERYKKASSDSSSGGRSASEANAQFYQQEAAKLRVQISNLQNHNRQMMGEGLSTMNGKDLKNLETKLEKGISRIRSKKNEMLFAEIEHMKKRIAQEIYLHNDNQLLRAKIGEGERSHHNVNGLSGSTSYESMQSQFDSRGFFQVTGLQPNNNNQYAGQDMSLQFV* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1004 246 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Gso8g1004 246 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Gso8g1004 246 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Gso8g1004 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Gso8g1004 246 Pfam K-box region 101 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso8g1004 246 Coils Coil 97 131 - -
Gso8g1004 246 Gene3D - 29 127 IPR036879 GO:0003677|GO:0046983
Gso8g1004 246 CDD MADS_MEF2_like 18 87 IPR033896 GO:0000977|GO:0045944
Gso8g1004 246 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Gso8g1004 246 ProSiteProfiles K-box domain profile. 104 197 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso8g1004 246 SUPERFAMILY SRF-like 18 90 IPR036879 GO:0003677|GO:0046983
Gso8g1004 246 PANTHER AGAMOUSB 11 241 - -
Gso8g1004 246 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Gso8g1004 246 MobiDBLite consensus disorder prediction 1 21 - -
Gso8g1004 246 PANTHER MADS BOX PROTEIN 11 241 - -
Gso8g1004 246 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Gso8g1004 246 Coils Coil 141 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1004 Gso-Chr8 9325812 9333264 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1004 15 246 MADS-box Gene Family AT3G58780 61.411 2.98e-94 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso8g1004 K-box 2.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1004 K09264 - gmx:100776263 463.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1388 5 37347983 37356151 Gso8g1004 8 9325812 9333264 GST
Gso8g1004 8 9325812 9333264 Gso15g0753 15 6812356 6822556 PCT
Gso8g1004 8 9325812 9333264 Gso11g2517 11 41214562 41224220 PCT
Gso15g0753 15 6812356 6822556 Gso8g1004 8 9325812 9333264 PCT
Gso11g2517 11 41214562 41224220 Gso8g1004 8 9325812 9333264 PCT