Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1002 ATGGATGAGAATTCAGCAACAAATGGAACCCATGAGGTGATTTTAGATGTAAACAAGGATGTCTCTAGAACAACTCAACCCTCACGCTCTTGTGTCAATGTTTCTTTCTTACAGAAGTTGGTAGCTGAGGTGGTGGGAACATATTTCTTGATATTTGCAGGGTGTGCTTCAGTGGTGGTGAACAAGAACAACAACAACGTTGTAACACATCCTGGGATATCAATTGTTTGGGGACTGGTTGTGATGGTACTGGTTTACTCTGTTGGTCACATCTCTGGTGCCCATTTCAATCCTGCAGTCACCATTGCTTTTGCCTCCACCAGAAGGTTTCCCTTGAAGCAGGTACCGGTTTATGTAGTAGCTCAGGTTGTTGGATCCACACTTGCAAGTGCGACTCTCAGACTATTATTTAGTGGCAAGGAAACCCAGTTTTCAGGAACACTCCCATCTGGGTCTAACCTGCAAGCTTTTGTGATTGAATTCTTAATCACCTTTTTCCTTATGTTTGTCATATCCGGGGTTGCCACTGATGACAGAGCGATCGGTGAGTTGGCCGGGATTGCCGTTGGGTCCACTGTGCTGTTGAATGTGATGTTTGCAGGGCCAATCACAGGAGCATCAATGAACCCAGCAAGAAGCATAGGGCCAGCCATTTTACACAATGAATACAGAGGAATATGGATATATATAGTGTCTCCAACTCTTGGGGCCGTGGCTGGAACATGGGTATACAACACCATTAGGTACACGGACAAGCCACTGCGTGAGATCACCAAGAGTACCTCTTTCCTTAAAGGAGTAGGGCGTAGTGGTAGCTCTAGGTGA 825 0.4582 MDENSATNGTHEVILDVNKDVSRTTQPSRSCVNVSFLQKLVAEVVGTYFLIFAGCASVVVNKNNNNVVTHPGISIVWGLVVMVLVYSVGHISGAHFNPAVTIAFASTRRFPLKQVPVYVVAQVVGSTLASATLRLLFSGKETQFSGTLPSGSNLQAFVIEFLITFFLMFVISGVATDDRAIGELAGIAVGSTVLLNVMFAGPITGASMNPARSIGPAILHNEYRGIWIYIVSPTLGAVAGTWVYNTIRYTDKPLREITKSTSFLKGVGRSGSSR* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1002 274 CDD MIP 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso8g1002 274 Gene3D Glycerol uptake facilitator protein. 2 259 IPR023271 -
Gso8g1002 274 TIGRFAM MIP: MIP family channel proteins 42 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso8g1002 274 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Gso8g1002 274 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 268 - -
Gso8g1002 274 PANTHER AQUAPORIN NIP2-1 1 268 IPR034294 -
Gso8g1002 274 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso8g1002 274 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso8g1002 274 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso8g1002 274 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso8g1002 274 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso8g1002 274 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso8g1002 274 Pfam Major intrinsic protein 33 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso8g1002 274 SUPERFAMILY Aquaporin-like 32 258 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1002 Gso-Chr8 9286105 9288703 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1002 20 270 Major Intrinsic Protein MIP AT5G37820 59.761 1.69e-105 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1002 K09874 - gmx:100794883 522.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1381 5 37287406 37290520 Gso8g1002 8 9286105 9288703 GST
Gso8g1002 8 9286105 9288703 Gso15g0743 15 6706642 6709157 PCT
Gso15g0743 15 6706642 6709157 Gso8g1002 8 9286105 9288703 PCT